miRNA display CGI


Results 21 - 40 of 117 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29504 5' -57.3 NC_006151.1 + 27458 0.67 0.820459
Target:  5'- uGGguCgGGGGCgGGCGgucgaGCGGGGGg -3'
miRNA:   3'- gUCguG-CUCCGaCCGCaag--UGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 29412 0.73 0.470952
Target:  5'- -cGCGCGgagaAGGCUcGGUGUggcCGCGGGGGg -3'
miRNA:   3'- guCGUGC----UCCGA-CCGCAa--GUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 29609 0.68 0.776033
Target:  5'- gCGGCG-GGGGCUGGUGUgggaggagUGGGGGa -3'
miRNA:   3'- -GUCGUgCUCCGACCGCAagu-----GCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 30329 0.67 0.820459
Target:  5'- aAGaugAgGAGGC-GGCGgcggCGCGAGGGc -3'
miRNA:   3'- gUCg--UgCUCCGaCCGCaa--GUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 31635 0.72 0.53799
Target:  5'- cCGGCACGAGcGCacGCGggCGCGcGGGGa -3'
miRNA:   3'- -GUCGUGCUC-CGacCGCaaGUGC-UCCC- -5'
29504 5' -57.3 NC_006151.1 + 33152 0.67 0.820459
Target:  5'- gAGUGCGAGGCgGGuCGgggGCGGGGa -3'
miRNA:   3'- gUCGUGCUCCGaCC-GCaagUGCUCCc -5'
29504 5' -57.3 NC_006151.1 + 33218 0.74 0.417035
Target:  5'- gAGCACGcgGGGCgccccGGCGggCGgGAGGGg -3'
miRNA:   3'- gUCGUGC--UCCGa----CCGCaaGUgCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 33955 0.66 0.85303
Target:  5'- gGGCuCGGGGCgggacgcGGCGcccgCGCGGGGa -3'
miRNA:   3'- gUCGuGCUCCGa------CCGCaa--GUGCUCCc -5'
29504 5' -57.3 NC_006151.1 + 34618 0.82 0.137339
Target:  5'- gAGCGCGAGGCgcggguggGGCGacCGCGGGGGu -3'
miRNA:   3'- gUCGUGCUCCGa-------CCGCaaGUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 41468 0.67 0.828872
Target:  5'- cCGGCgggacgaugACGAcGGCgaccGCGUggCGCGAGGGg -3'
miRNA:   3'- -GUCG---------UGCU-CCGac--CGCAa-GUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 49281 0.68 0.73817
Target:  5'- gCGGCucuGCGAGacccgccccaaGCUGGUGUUCAUGcucuGGGg -3'
miRNA:   3'- -GUCG---UGCUC-----------CGACCGCAAGUGCu---CCC- -5'
29504 5' -57.3 NC_006151.1 + 49602 0.67 0.794242
Target:  5'- cCAGCGCGcugccGGUccUGGCGgugcugCGCGAGuGGg -3'
miRNA:   3'- -GUCGUGCu----CCG--ACCGCaa----GUGCUC-CC- -5'
29504 5' -57.3 NC_006151.1 + 54646 0.67 0.81101
Target:  5'- gCGGCGCGAGcGCUGcGUGgacgagCACGAccuggccGGGc -3'
miRNA:   3'- -GUCGUGCUC-CGAC-CGCaa----GUGCU-------CCC- -5'
29504 5' -57.3 NC_006151.1 + 55954 0.7 0.628264
Target:  5'- uGGCACGcccucccgcGGCUGGUGUgcgaggugCGCGAGGu -3'
miRNA:   3'- gUCGUGCu--------CCGACCGCAa-------GUGCUCCc -5'
29504 5' -57.3 NC_006151.1 + 57199 0.69 0.688868
Target:  5'- uGGCGCGAGGCgaaGGCccgcUCgACGAGGc -3'
miRNA:   3'- gUCGUGCUCCGa--CCGca--AG-UGCUCCc -5'
29504 5' -57.3 NC_006151.1 + 59342 0.66 0.860699
Target:  5'- cCAGCGCGcucaGGGCc-GCGcgCACGGGGc -3'
miRNA:   3'- -GUCGUGC----UCCGacCGCaaGUGCUCCc -5'
29504 5' -57.3 NC_006151.1 + 60740 0.74 0.425761
Target:  5'- gAGCACGAGGCagcGGCGgcUCGCGAaGGc -3'
miRNA:   3'- gUCGUGCUCCGa--CCGCa-AGUGCUcCC- -5'
29504 5' -57.3 NC_006151.1 + 60896 0.66 0.83711
Target:  5'- -cGCGCGAGcagGGCGUcCACGcGGGc -3'
miRNA:   3'- guCGUGCUCcgaCCGCAaGUGCuCCC- -5'
29504 5' -57.3 NC_006151.1 + 61783 0.72 0.498251
Target:  5'- gCGGCGCGAggccggccGGCUGGCGUUCcagcccaGCGuGGu -3'
miRNA:   3'- -GUCGUGCU--------CCGACCGCAAG-------UGCuCCc -5'
29504 5' -57.3 NC_006151.1 + 63166 0.72 0.499206
Target:  5'- gCGGUACGGGGCcuUGGgGcgCACGGGGc -3'
miRNA:   3'- -GUCGUGCUCCG--ACCgCaaGUGCUCCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.