Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29505 | 5' | -57.2 | NC_006151.1 | + | 139197 | 0.7 | 0.654905 |
Target: 5'- gGUCGGGG-CGCUGGAGcuccuggCGGCgacgcugCCg -3' miRNA: 3'- aCAGCUCCaGCGACCUCca-----GUCGa------GG- -5' |
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29505 | 5' | -57.2 | NC_006151.1 | + | 135006 | 0.67 | 0.817496 |
Target: 5'- uUGgCGGGGgCGCgGGGGGgcagCAGCggggCCg -3' miRNA: 3'- -ACaGCUCCaGCGaCCUCCa---GUCGa---GG- -5' |
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29505 | 5' | -57.2 | NC_006151.1 | + | 133610 | 0.7 | 0.654905 |
Target: 5'- gGcCGAGGggCGuCUGGGGGUCgcGGCggCCg -3' miRNA: 3'- aCaGCUCCa-GC-GACCUCCAG--UCGa-GG- -5' |
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29505 | 5' | -57.2 | NC_006151.1 | + | 133324 | 0.74 | 0.404939 |
Target: 5'- gUGUCGAGGcgCGCcGGGcGGcCGGUUCCg -3' miRNA: 3'- -ACAGCUCCa-GCGaCCU-CCaGUCGAGG- -5' |
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29505 | 5' | -57.2 | NC_006151.1 | + | 130198 | 0.7 | 0.644763 |
Target: 5'- -cUCGGGGUgccCGCU-GAGGacgcgCAGCUCCg -3' miRNA: 3'- acAGCUCCA---GCGAcCUCCa----GUCGAGG- -5' |
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29505 | 5' | -57.2 | NC_006151.1 | + | 124588 | 0.73 | 0.485969 |
Target: 5'- cGUCGAGGagG-UGGAGG-CGcGCUCCg -3' miRNA: 3'- aCAGCUCCagCgACCUCCaGU-CGAGG- -5' |
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29505 | 5' | -57.2 | NC_006151.1 | + | 119134 | 0.77 | 0.304124 |
Target: 5'- cGUgGGGG-CGCUGGuGuUCAGCUCCa -3' miRNA: 3'- aCAgCUCCaGCGACCuCcAGUCGAGG- -5' |
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29505 | 5' | -57.2 | NC_006151.1 | + | 111851 | 0.69 | 0.715085 |
Target: 5'- cGUCGGGGggCGCUcGGGGUC-GCaggCCg -3' miRNA: 3'- aCAGCUCCa-GCGAcCUCCAGuCGa--GG- -5' |
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29505 | 5' | -57.2 | NC_006151.1 | + | 103884 | 0.72 | 0.503102 |
Target: 5'- gGUCGAGGcgcgccaccuggCGCUGGAGGUggcgcgcgCGGCcgCCg -3' miRNA: 3'- aCAGCUCCa-----------GCGACCUCCA--------GUCGa-GG- -5' |
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29505 | 5' | -57.2 | NC_006151.1 | + | 88112 | 0.68 | 0.772751 |
Target: 5'- cGUCGAGGUCcgacaGCgGGcGGgc-GCUCCg -3' miRNA: 3'- aCAGCUCCAG-----CGaCCuCCaguCGAGG- -5' |
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29505 | 5' | -57.2 | NC_006151.1 | + | 67830 | 0.71 | 0.604175 |
Target: 5'- cGUCGucGUCGC-GGGGGcUCAGCagCCc -3' miRNA: 3'- aCAGCucCAGCGaCCUCC-AGUCGa-GG- -5' |
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29505 | 5' | -57.2 | NC_006151.1 | + | 67761 | 0.67 | 0.817496 |
Target: 5'- cGUCGGGGUgcggcgucgCGUUGaGGGcGUCcacguGCUCCa -3' miRNA: 3'- aCAGCUCCA---------GCGAC-CUC-CAGu----CGAGG- -5' |
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29505 | 5' | -57.2 | NC_006151.1 | + | 62235 | 0.67 | 0.788365 |
Target: 5'- cGUCGAGGUCGUcguguccggcuacgUGcAGGU--GCUCCc -3' miRNA: 3'- aCAGCUCCAGCG--------------ACcUCCAguCGAGG- -5' |
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29505 | 5' | -57.2 | NC_006151.1 | + | 57188 | 0.67 | 0.817496 |
Target: 5'- aGUCGGGGUCGUggcGcGAGGcgaaGGC-CCg -3' miRNA: 3'- aCAGCUCCAGCGa--C-CUCCag--UCGaGG- -5' |
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29505 | 5' | -57.2 | NC_006151.1 | + | 49635 | 0.66 | 0.865657 |
Target: 5'- aGUgGGGGUgggccgUGgaGGAGGUCgAGCccUCCg -3' miRNA: 3'- aCAgCUCCA------GCgaCCUCCAG-UCG--AGG- -5' |
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29505 | 5' | -57.2 | NC_006151.1 | + | 48132 | 0.66 | 0.850363 |
Target: 5'- -uUCGGcGG-CGCUGGGGGUUccuGGCaCCg -3' miRNA: 3'- acAGCU-CCaGCGACCUCCAG---UCGaGG- -5' |
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29505 | 5' | -57.2 | NC_006151.1 | + | 42812 | 0.69 | 0.68519 |
Target: 5'- cGUCGAGGUCGUgUGGGGGagAGagaCg -3' miRNA: 3'- aCAGCUCCAGCG-ACCUCCagUCgagG- -5' |
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29505 | 5' | -57.2 | NC_006151.1 | + | 28166 | 0.67 | 0.82598 |
Target: 5'- cGUCGGcGUCGUUGGGGcggcgagugccGUCGGCcgggCCg -3' miRNA: 3'- aCAGCUcCAGCGACCUC-----------CAGUCGa---GG- -5' |
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29505 | 5' | -57.2 | NC_006151.1 | + | 27460 | 0.68 | 0.769024 |
Target: 5'- gGUCGGGGgcgggcggucgaGCgGGGGGUCGGCg-- -3' miRNA: 3'- aCAGCUCCag----------CGaCCUCCAGUCGagg -5' |
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29505 | 5' | -57.2 | NC_006151.1 | + | 27315 | 0.67 | 0.817496 |
Target: 5'- gGUCGAGG-CGggGGAcGGggggCuGCUCCc -3' miRNA: 3'- aCAGCUCCaGCgaCCU-CCa---GuCGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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