miRNA display CGI


Results 41 - 60 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29506 5' -54.3 NC_006151.1 + 81509 0.67 0.940915
Target:  5'- cGAgaGCGcgGCCCGCGugagcucgGCGGCCGcGGc -3'
miRNA:   3'- aCUacUGCuaCGGGUGC--------UGCUGGU-CC- -5'
29506 5' -54.3 NC_006151.1 + 127386 0.67 0.940915
Target:  5'- gGGUGGCGggGgCCGCGGcCGAgucgaCGGGa -3'
miRNA:   3'- aCUACUGCuaCgGGUGCU-GCUg----GUCC- -5'
29506 5' -54.3 NC_006151.1 + 55394 0.67 0.940915
Target:  5'- aGGUG-CGgcGCCUGCG-CGAgCAGGc -3'
miRNA:   3'- aCUACuGCuaCGGGUGCuGCUgGUCC- -5'
29506 5' -54.3 NC_006151.1 + 86866 0.67 0.940448
Target:  5'- ---cGGCGAcuacaucuucgUGCCCGCGGCGcaguacaACCAGc -3'
miRNA:   3'- acuaCUGCU-----------ACGGGUGCUGC-------UGGUCc -5'
29506 5' -54.3 NC_006151.1 + 21040 0.67 0.938073
Target:  5'- cUGAaGAgGAcGCCCcCGACGcgcggggucagggcgGCCAGGg -3'
miRNA:   3'- -ACUaCUgCUaCGGGuGCUGC---------------UGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 142264 0.67 0.93613
Target:  5'- ---cGGCGAggagcGCCCcguccCGGCGGCCAGa -3'
miRNA:   3'- acuaCUGCUa----CGGGu----GCUGCUGGUCc -5'
29506 5' -54.3 NC_006151.1 + 52889 0.67 0.93613
Target:  5'- cGAaGGCGccGUGCgCACGAUgguguaGGCCGGGa -3'
miRNA:   3'- aCUaCUGC--UACGgGUGCUG------CUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 2496 0.67 0.93613
Target:  5'- cGAaGGCGgcGCCCGCGucaaaGuCCGGGu -3'
miRNA:   3'- aCUaCUGCuaCGGGUGCug---CuGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 99588 0.67 0.93613
Target:  5'- aGGUGGCGGcgGCCgaGCGcCGcGCCGGGc -3'
miRNA:   3'- aCUACUGCUa-CGGg-UGCuGC-UGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 55149 0.67 0.935639
Target:  5'- gGA-GACGGUGCgcucguaCCuCGACGAgaCCGGGg -3'
miRNA:   3'- aCUaCUGCUACG-------GGuGCUGCU--GGUCC- -5'
29506 5' -54.3 NC_006151.1 + 6862 0.67 0.931106
Target:  5'- ---cGGCGGccaucuUGCCCcauCGACGGCCAauGGg -3'
miRNA:   3'- acuaCUGCU------ACGGGu--GCUGCUGGU--CC- -5'
29506 5' -54.3 NC_006151.1 + 54129 0.67 0.931106
Target:  5'- cUGcgGACGGgcucUGCCCcgGCGGCG-CCGcGGa -3'
miRNA:   3'- -ACuaCUGCU----ACGGG--UGCUGCuGGU-CC- -5'
29506 5' -54.3 NC_006151.1 + 120161 0.67 0.931106
Target:  5'- cGGUGACGGUgacGCUCGcCGACGGCaucguGGc -3'
miRNA:   3'- aCUACUGCUA---CGGGU-GCUGCUGgu---CC- -5'
29506 5' -54.3 NC_006151.1 + 122677 0.67 0.931106
Target:  5'- cGccGA-GGUGCgCGCGGCGGCCGuGGa -3'
miRNA:   3'- aCuaCUgCUACGgGUGCUGCUGGU-CC- -5'
29506 5' -54.3 NC_006151.1 + 110899 0.67 0.93059
Target:  5'- aGGUGcuugucguGCGcGUGCCgcagguuCACGAgGGCCAGGg -3'
miRNA:   3'- aCUAC--------UGC-UACGG-------GUGCUgCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 76991 0.67 0.927976
Target:  5'- cGGUGAgGAgcgccgcgagggugGCCCGCGAgcCGuggagcGCCAGGa -3'
miRNA:   3'- aCUACUgCUa-------------CGGGUGCU--GC------UGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 82141 0.67 0.925841
Target:  5'- cGcgGGCGG-GCCCgGCGGCu-CCAGGu -3'
miRNA:   3'- aCuaCUGCUaCGGG-UGCUGcuGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 63484 0.67 0.925841
Target:  5'- cGgcGGCGgcGCCCGaagaaGGUGGCCAGGu -3'
miRNA:   3'- aCuaCUGCuaCGGGUg----CUGCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 128445 0.67 0.925841
Target:  5'- ---gGGCGucucgGCCCACGugGcGCCgAGGa -3'
miRNA:   3'- acuaCUGCua---CGGGUGCugC-UGG-UCC- -5'
29506 5' -54.3 NC_006151.1 + 87432 0.67 0.920335
Target:  5'- cGGUGGCcGUGCCCGCcGCcGCCGcGGc -3'
miRNA:   3'- aCUACUGcUACGGGUGcUGcUGGU-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.