miRNA display CGI


Results 21 - 40 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29506 5' -54.3 NC_006151.1 + 20314 0.68 0.889235
Target:  5'- -cGUGGCGuUGgCgGCGGCGAgCAGGa -3'
miRNA:   3'- acUACUGCuACgGgUGCUGCUgGUCC- -5'
29506 5' -54.3 NC_006151.1 + 20547 0.7 0.810696
Target:  5'- ---cGGCGggGUCCACGACG-CgCAGGc -3'
miRNA:   3'- acuaCUGCuaCGGGUGCUGCuG-GUCC- -5'
29506 5' -54.3 NC_006151.1 + 20626 0.7 0.827949
Target:  5'- gUGGUGGgGgcGCCCccuggGCGGC-ACCAGGg -3'
miRNA:   3'- -ACUACUgCuaCGGG-----UGCUGcUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 20996 0.68 0.882318
Target:  5'- cGAgGACGGcgcUGCCgGCGACGugCAc- -3'
miRNA:   3'- aCUaCUGCU---ACGGgUGCUGCugGUcc -5'
29506 5' -54.3 NC_006151.1 + 21040 0.67 0.938073
Target:  5'- cUGAaGAgGAcGCCCcCGACGcgcggggucagggcgGCCAGGg -3'
miRNA:   3'- -ACUaCUgCUaCGGGuGCUGC---------------UGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 21190 0.66 0.961322
Target:  5'- ---cGuCGGUGUCCGCGGgacCGcCCAGGa -3'
miRNA:   3'- acuaCuGCUACGGGUGCU---GCuGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 21287 0.66 0.961322
Target:  5'- ----cGCGGUGCCCGugcCGACGAUCAc- -3'
miRNA:   3'- acuacUGCUACGGGU---GCUGCUGGUcc -5'
29506 5' -54.3 NC_006151.1 + 21315 0.66 0.953851
Target:  5'- cGGUGGCGcgagacGCCCgGCG-CGGCgGGGg -3'
miRNA:   3'- aCUACUGCua----CGGG-UGCuGCUGgUCC- -5'
29506 5' -54.3 NC_006151.1 + 21443 0.68 0.902381
Target:  5'- cGgcGugGGgugGCCCcCGGCGGCguGGu -3'
miRNA:   3'- aCuaCugCUa--CGGGuGCUGCUGguCC- -5'
29506 5' -54.3 NC_006151.1 + 21835 0.7 0.819408
Target:  5'- cGGUGAgGAUGUUCACGcCGucgacggacACCAGGc -3'
miRNA:   3'- aCUACUgCUACGGGUGCuGC---------UGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 22618 1.1 0.003781
Target:  5'- aUGAUGACGAUGCCCACGACGACCAGGc -3'
miRNA:   3'- -ACUACUGCUACGGGUGCUGCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 24634 0.71 0.774301
Target:  5'- aGGUaGGCGA-GCCCGCGgagcACGGCCcGGa -3'
miRNA:   3'- aCUA-CUGCUaCGGGUGC----UGCUGGuCC- -5'
29506 5' -54.3 NC_006151.1 + 24959 0.69 0.875178
Target:  5'- -cGUGACGAUGCgCGCcGCGGCCu-- -3'
miRNA:   3'- acUACUGCUACGgGUGcUGCUGGucc -5'
29506 5' -54.3 NC_006151.1 + 27131 0.66 0.962709
Target:  5'- aGAcGGCGAUGCCgcgaaagaggcgguuCACGuCGGCCccgAGGc -3'
miRNA:   3'- aCUaCUGCUACGG---------------GUGCuGCUGG---UCC- -5'
29506 5' -54.3 NC_006151.1 + 28245 0.66 0.945462
Target:  5'- ---cGACGG-GCCCAU--UGGCCGGGg -3'
miRNA:   3'- acuaCUGCUaCGGGUGcuGCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 28508 0.7 0.819408
Target:  5'- aGggGGCGGUccgGCCCGCGggacggGCGuCCGGGa -3'
miRNA:   3'- aCuaCUGCUA---CGGGUGC------UGCuGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 28790 0.66 0.949773
Target:  5'- cGG-GGCGGUccgGCCCGCGggacggGCGuCCGGGa -3'
miRNA:   3'- aCUaCUGCUA---CGGGUGC------UGCuGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 29586 0.69 0.844486
Target:  5'- gGAUcgcGGCGGcUGCggCCGCGGCGGCgGGGg -3'
miRNA:   3'- aCUA---CUGCU-ACG--GGUGCUGCUGgUCC- -5'
29506 5' -54.3 NC_006151.1 + 31752 0.66 0.945462
Target:  5'- cGggGACGc-GCCUGCGGCGgcgggcgcgcGCCGGGc -3'
miRNA:   3'- aCuaCUGCuaCGGGUGCUGC----------UGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 31954 0.66 0.955418
Target:  5'- gUGAUGACGccggggacgcgggacGUGCCCGCcgccugggaGcCGGCgAGGa -3'
miRNA:   3'- -ACUACUGC---------------UACGGGUG---------CuGCUGgUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.