miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29506 5' -54.3 NC_006151.1 + 2284 0.71 0.76486
Target:  5'- ---cGGCGGggcGCCCGCGGCGGcgacggcgcCCGGGg -3'
miRNA:   3'- acuaCUGCUa--CGGGUGCUGCU---------GGUCC- -5'
29506 5' -54.3 NC_006151.1 + 2415 0.71 0.745632
Target:  5'- ---cGGCGAgGCCC-CGGCGGCCgcAGGa -3'
miRNA:   3'- acuaCUGCUaCGGGuGCUGCUGG--UCC- -5'
29506 5' -54.3 NC_006151.1 + 2496 0.67 0.93613
Target:  5'- cGAaGGCGgcGCCCGCGucaaaGuCCGGGu -3'
miRNA:   3'- aCUaCUGCuaCGGGUGCug---CuGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 2591 0.66 0.953851
Target:  5'- cGcUGGCGGUagGCgCGCGGCGGCagCGGGa -3'
miRNA:   3'- aCuACUGCUA--CGgGUGCUGCUG--GUCC- -5'
29506 5' -54.3 NC_006151.1 + 2730 0.66 0.9577
Target:  5'- cGcgGGCGAagcaggccggGCCCACGAUGgaGCUAGa -3'
miRNA:   3'- aCuaCUGCUa---------CGGGUGCUGC--UGGUCc -5'
29506 5' -54.3 NC_006151.1 + 3278 0.75 0.563198
Target:  5'- ---cGGCGAUGUgcgCCAgGGCGGCCGGGu -3'
miRNA:   3'- acuaCUGCUACG---GGUgCUGCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 4198 0.73 0.655217
Target:  5'- cGAggcaGGCGG-GCCCGagGGCGGCCGGGg -3'
miRNA:   3'- aCUa---CUGCUaCGGGUg-CUGCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 4930 0.66 0.961322
Target:  5'- gGGUGAgcaGcgGCCCGuCGGuCGGCgGGGg -3'
miRNA:   3'- aCUACUg--CuaCGGGU-GCU-GCUGgUCC- -5'
29506 5' -54.3 NC_006151.1 + 5860 0.73 0.665455
Target:  5'- gGggGACGAgcGCCCGgGGCcGCCGGGg -3'
miRNA:   3'- aCuaCUGCUa-CGGGUgCUGcUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 5988 0.72 0.695971
Target:  5'- cUGAUGGaGA-GCCCGaccgggggaccCGGCGGCCGGGg -3'
miRNA:   3'- -ACUACUgCUaCGGGU-----------GCUGCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 6269 0.71 0.778042
Target:  5'- cGGacGCGAUGCCCucuuccucggccgcgGCGGCGgccGCCAGGa -3'
miRNA:   3'- aCUacUGCUACGGG---------------UGCUGC---UGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 6862 0.67 0.931106
Target:  5'- ---cGGCGGccaucuUGCCCcauCGACGGCCAauGGg -3'
miRNA:   3'- acuaCUGCU------ACGGGu--GCUGCUGGU--CC- -5'
29506 5' -54.3 NC_006151.1 + 10015 0.66 0.953851
Target:  5'- cGgcGGCGgcGgUCGCcGCGGCCAGGa -3'
miRNA:   3'- aCuaCUGCuaCgGGUGcUGCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 10569 0.66 0.949773
Target:  5'- -aAUGGCGcgGCCgGCucGGCGGCCcGGc -3'
miRNA:   3'- acUACUGCuaCGGgUG--CUGCUGGuCC- -5'
29506 5' -54.3 NC_006151.1 + 10911 0.68 0.882318
Target:  5'- cGcgGAcCGGggucggGCCCACGGCG-CCgAGGg -3'
miRNA:   3'- aCuaCU-GCUa-----CGGGUGCUGCuGG-UCC- -5'
29506 5' -54.3 NC_006151.1 + 14194 0.68 0.895924
Target:  5'- cGGUGACGucggcaucgGCCUcgACGACGACgaucgCGGGa -3'
miRNA:   3'- aCUACUGCua-------CGGG--UGCUGCUG-----GUCC- -5'
29506 5' -54.3 NC_006151.1 + 17022 0.66 0.949773
Target:  5'- gGGUGGCcggGAUcCCgGCGACGAucacguCCAGGg -3'
miRNA:   3'- aCUACUG---CUAcGGgUGCUGCU------GGUCC- -5'
29506 5' -54.3 NC_006151.1 + 17124 0.72 0.726003
Target:  5'- cGgcGGCGGUGCUgCGggaGGCGGCCAGGa -3'
miRNA:   3'- aCuaCUGCUACGG-GUg--CUGCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 19833 0.69 0.836311
Target:  5'- cGGUGACGggGCCCggggucgucucgGCGGagaGGCuCGGGg -3'
miRNA:   3'- aCUACUGCuaCGGG------------UGCUg--CUG-GUCC- -5'
29506 5' -54.3 NC_006151.1 + 20106 0.72 0.706048
Target:  5'- gGggGACGGgcGCCC-CGGCGACgGGGc -3'
miRNA:   3'- aCuaCUGCUa-CGGGuGCUGCUGgUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.