miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29506 5' -54.3 NC_006151.1 + 22618 1.1 0.003781
Target:  5'- aUGAUGACGAUGCCCACGACGACCAGGc -3'
miRNA:   3'- -ACUACUGCUACGGGUGCUGCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 87980 0.79 0.330242
Target:  5'- cGAUGACGAcgaucaugcUGCUCACGACgGGCCAGc -3'
miRNA:   3'- aCUACUGCU---------ACGGGUGCUG-CUGGUCc -5'
29506 5' -54.3 NC_006151.1 + 68267 0.77 0.428983
Target:  5'- cGgcGACGGUcgcggcgccggGCgCCACGGCGGCCAGGc -3'
miRNA:   3'- aCuaCUGCUA-----------CG-GGUGCUGCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 107253 0.76 0.474953
Target:  5'- ---gGGCGAcGCCCGCGugGACCcGGc -3'
miRNA:   3'- acuaCUGCUaCGGGUGCugCUGGuCC- -5'
29506 5' -54.3 NC_006151.1 + 89606 0.76 0.484442
Target:  5'- gUGAgGACGAUGgCCGCGAgGAUgAGGa -3'
miRNA:   3'- -ACUaCUGCUACgGGUGCUgCUGgUCC- -5'
29506 5' -54.3 NC_006151.1 + 142135 0.76 0.503685
Target:  5'- gGAUGGCgcccGAUGCCUGCGcCGGCgCAGGg -3'
miRNA:   3'- aCUACUG----CUACGGGUGCuGCUG-GUCC- -5'
29506 5' -54.3 NC_006151.1 + 133377 0.76 0.51343
Target:  5'- gUGGUGGCG--GCCgggGCGGCGGCCGGGg -3'
miRNA:   3'- -ACUACUGCuaCGGg--UGCUGCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 45179 0.76 0.51343
Target:  5'- gGGUGGCG-UGCCCgccaccacggACGGCGACgGGGu -3'
miRNA:   3'- aCUACUGCuACGGG----------UGCUGCUGgUCC- -5'
29506 5' -54.3 NC_006151.1 + 82689 0.75 0.523252
Target:  5'- cGAgGGCGGcgGCCCccGCGAgGGCCAGGa -3'
miRNA:   3'- aCUaCUGCUa-CGGG--UGCUgCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 3278 0.75 0.563198
Target:  5'- ---cGGCGAUGUgcgCCAgGGCGGCCGGGu -3'
miRNA:   3'- acuaCUGCUACG---GGUgCUGCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 88182 0.74 0.582467
Target:  5'- gUGGUaGACGGUGUCgGCGGCguggucgGACCAGGc -3'
miRNA:   3'- -ACUA-CUGCUACGGgUGCUG-------CUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 130920 0.74 0.583486
Target:  5'- cGGUGGCcggGCCCGCGGgGGCgGGGg -3'
miRNA:   3'- aCUACUGcuaCGGGUGCUgCUGgUCC- -5'
29506 5' -54.3 NC_006151.1 + 51172 0.74 0.593685
Target:  5'- aUGGUGACGugcaggGCCCGCuccACGACgAGGg -3'
miRNA:   3'- -ACUACUGCua----CGGGUGc--UGCUGgUCC- -5'
29506 5' -54.3 NC_006151.1 + 81988 0.74 0.603913
Target:  5'- ---gGGC--UGCaCCACGGCGGCCAGGg -3'
miRNA:   3'- acuaCUGcuACG-GGUGCUGCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 75589 0.74 0.603913
Target:  5'- ---aGGCGGUcGCCgACGACGACgAGGu -3'
miRNA:   3'- acuaCUGCUA-CGGgUGCUGCUGgUCC- -5'
29506 5' -54.3 NC_006151.1 + 125787 0.74 0.614163
Target:  5'- aUGGUGGaGGUGCCCGaGACGAUCAGc -3'
miRNA:   3'- -ACUACUgCUACGGGUgCUGCUGGUCc -5'
29506 5' -54.3 NC_006151.1 + 75319 0.74 0.624425
Target:  5'- gGGUGGCagagGGUGCCCAUGGCGugCucgaAGGu -3'
miRNA:   3'- aCUACUG----CUACGGGUGCUGCugG----UCC- -5'
29506 5' -54.3 NC_006151.1 + 74063 0.73 0.634694
Target:  5'- aGcAUGGCGuccgcGUCCACGGCGACgCAGGc -3'
miRNA:   3'- aC-UACUGCua---CGGGUGCUGCUG-GUCC- -5'
29506 5' -54.3 NC_006151.1 + 4198 0.73 0.655217
Target:  5'- cGAggcaGGCGG-GCCCGagGGCGGCCGGGg -3'
miRNA:   3'- aCUa---CUGCUaCGGGUg-CUGCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 114033 0.73 0.655217
Target:  5'- -cGUGACGcUGCCCuuCGAccuCGGCCAGGc -3'
miRNA:   3'- acUACUGCuACGGGu-GCU---GCUGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.