miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29507 3' -59.3 NC_006151.1 + 100225 0.66 0.773914
Target:  5'- gCGGGCGCCGuggccgagcgcGUGgUGGCgCUCGa--- -3'
miRNA:   3'- -GUCCGCGGC-----------CAUgACCGgGAGCaacu -5'
29507 3' -59.3 NC_006151.1 + 17108 0.66 0.773914
Target:  5'- gGGGCGCCGGg---GGCUC-CGgcGGc -3'
miRNA:   3'- gUCCGCGGCCaugaCCGGGaGCaaCU- -5'
29507 3' -59.3 NC_006151.1 + 64772 0.66 0.772994
Target:  5'- gCGGGgGCUGGUugccggggcgcgaGCUGgccacGCCCUCGcgGAa -3'
miRNA:   3'- -GUCCgCGGCCA-------------UGAC-----CGGGAGCaaCU- -5'
29507 3' -59.3 NC_006151.1 + 73859 0.66 0.772072
Target:  5'- aCGGGCGCCGGguagaagaaGGCCCccUCGa--- -3'
miRNA:   3'- -GUCCGCGGCCauga-----CCGGG--AGCaacu -5'
29507 3' -59.3 NC_006151.1 + 3134 0.66 0.764653
Target:  5'- cCGGGCGCgGGgc---GCCCUCGgcGGg -3'
miRNA:   3'- -GUCCGCGgCCaugacCGGGAGCaaCU- -5'
29507 3' -59.3 NC_006151.1 + 111359 0.66 0.764653
Target:  5'- uGGGCGCgCGGgGCgagGGCcCCUCGc--- -3'
miRNA:   3'- gUCCGCG-GCCaUGa--CCG-GGAGCaacu -5'
29507 3' -59.3 NC_006151.1 + 72654 0.66 0.755278
Target:  5'- uCAGGCGCuCGcGUGCUGgaagcaGCCCUucagCGggGAc -3'
miRNA:   3'- -GUCCGCG-GC-CAUGAC------CGGGA----GCaaCU- -5'
29507 3' -59.3 NC_006151.1 + 43941 0.66 0.755278
Target:  5'- gAGGgGCCGGg---GGCCCUCc---- -3'
miRNA:   3'- gUCCgCGGCCaugaCCGGGAGcaacu -5'
29507 3' -59.3 NC_006151.1 + 5096 0.66 0.755278
Target:  5'- gCGGGCGCCGGcggagACgguggcGGCCCggcgCGggcgagUGGg -3'
miRNA:   3'- -GUCCGCGGCCa----UGa-----CCGGGa---GCa-----ACU- -5'
29507 3' -59.3 NC_006151.1 + 138193 0.66 0.745798
Target:  5'- -uGGCGCCcGUGCUgcGGCaCCUCGa--- -3'
miRNA:   3'- guCCGCGGcCAUGA--CCG-GGAGCaacu -5'
29507 3' -59.3 NC_006151.1 + 76030 0.66 0.745798
Target:  5'- -cGGCGCaggccacgCGGUccgcgaGCcGGCCCUCGUaGAg -3'
miRNA:   3'- guCCGCG--------GCCA------UGaCCGGGAGCAaCU- -5'
29507 3' -59.3 NC_006151.1 + 2372 0.66 0.726557
Target:  5'- aAGGCGCgcaacuCGGccgGCaGGCCCUCGggGc -3'
miRNA:   3'- gUCCGCG------GCCa--UGaCCGGGAGCaaCu -5'
29507 3' -59.3 NC_006151.1 + 106799 0.66 0.726557
Target:  5'- -cGGCGgCGGUGCUcgucggGGCCC-CGcUGGu -3'
miRNA:   3'- guCCGCgGCCAUGA------CCGGGaGCaACU- -5'
29507 3' -59.3 NC_006151.1 + 130967 0.67 0.716815
Target:  5'- gCGGGgGCCGGUACcccGGCCgCcCGggcUGAa -3'
miRNA:   3'- -GUCCgCGGCCAUGa--CCGG-GaGCa--ACU- -5'
29507 3' -59.3 NC_006151.1 + 35419 0.67 0.707002
Target:  5'- gCGGGgGCCGGgcaUGCaaaUGGUCCUCGcgagGAa -3'
miRNA:   3'- -GUCCgCGGCC---AUG---ACCGGGAGCaa--CU- -5'
29507 3' -59.3 NC_006151.1 + 61002 0.67 0.707002
Target:  5'- uCAGGUGCucguccacgCGGUGCaGGCUCUCGa--- -3'
miRNA:   3'- -GUCCGCG---------GCCAUGaCCGGGAGCaacu -5'
29507 3' -59.3 NC_006151.1 + 132757 0.67 0.707002
Target:  5'- -uGGCGCCcagcaGCgccgGGCCCUCGUcGAa -3'
miRNA:   3'- guCCGCGGcca--UGa---CCGGGAGCAaCU- -5'
29507 3' -59.3 NC_006151.1 + 54419 0.67 0.707002
Target:  5'- gAGGCGCUGGcGC-GGCgCUUCGgcGAc -3'
miRNA:   3'- gUCCGCGGCCaUGaCCG-GGAGCaaCU- -5'
29507 3' -59.3 NC_006151.1 + 64313 0.67 0.6872
Target:  5'- gCAGcGCGCC-GUGCUGGCCUcgcaccacgUCGgcGGg -3'
miRNA:   3'- -GUC-CGCGGcCAUGACCGGG---------AGCaaCU- -5'
29507 3' -59.3 NC_006151.1 + 4615 0.67 0.686205
Target:  5'- gGGGCGCguggaccCGGcGCUGGCagaaCUgGUUGAa -3'
miRNA:   3'- gUCCGCG-------GCCaUGACCGg---GAgCAACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.