miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29507 5' -60.2 NC_006151.1 + 21901 1.06 0.00136
Target:  5'- gAGCCACCAUGAGCAGCCCCAGCUCGUc -3'
miRNA:   3'- -UCGGUGGUACUCGUCGGGGUCGAGCA- -5'
29507 5' -60.2 NC_006151.1 + 59600 0.76 0.18275
Target:  5'- cGGCCACCAcGGGCacGGCCCCGGaggCGUa -3'
miRNA:   3'- -UCGGUGGUaCUCG--UCGGGGUCga-GCA- -5'
29507 5' -60.2 NC_006151.1 + 109931 0.76 0.201792
Target:  5'- cGCCGCCGgccucuccccUGGGCGGCCUCGGCcgCGUc -3'
miRNA:   3'- uCGGUGGU----------ACUCGUCGGGGUCGa-GCA- -5'
29507 5' -60.2 NC_006151.1 + 115459 0.74 0.263177
Target:  5'- cGCgGCCAUGAGCu-CCCCgAGCUCGc -3'
miRNA:   3'- uCGgUGGUACUCGucGGGG-UCGAGCa -5'
29507 5' -60.2 NC_006151.1 + 110833 0.73 0.309647
Target:  5'- aGGCCgACCGUGGGcCGGgCCCAGCUgcUGUa -3'
miRNA:   3'- -UCGG-UGGUACUC-GUCgGGGUCGA--GCA- -5'
29507 5' -60.2 NC_006151.1 + 103922 0.72 0.316775
Target:  5'- cGGCCGCCGUgGAGgAGCCgCAGCUg-- -3'
miRNA:   3'- -UCGGUGGUA-CUCgUCGGgGUCGAgca -5'
29507 5' -60.2 NC_006151.1 + 53427 0.72 0.324025
Target:  5'- uGCCGCCc-GAGCAGCCCgGcCUCGUc -3'
miRNA:   3'- uCGGUGGuaCUCGUCGGGgUcGAGCA- -5'
29507 5' -60.2 NC_006151.1 + 51353 0.72 0.338894
Target:  5'- cGGCCaggACCGUGAGCaccGGCCCguGCUgGa -3'
miRNA:   3'- -UCGG---UGGUACUCG---UCGGGguCGAgCa -5'
29507 5' -60.2 NC_006151.1 + 10984 0.72 0.346512
Target:  5'- uGUCACgGUgGAGCgggccgggGGCCCCGGCUCGc -3'
miRNA:   3'- uCGGUGgUA-CUCG--------UCGGGGUCGAGCa -5'
29507 5' -60.2 NC_006151.1 + 2320 0.72 0.346512
Target:  5'- cAG-CACCAgcgGGGCGGCCUCGGCgUCGg -3'
miRNA:   3'- -UCgGUGGUa--CUCGUCGGGGUCG-AGCa -5'
29507 5' -60.2 NC_006151.1 + 71003 0.72 0.354252
Target:  5'- uGGCCAUCGUGGGCGccaugcGCCgCgAGCUCGc -3'
miRNA:   3'- -UCGGUGGUACUCGU------CGG-GgUCGAGCa -5'
29507 5' -60.2 NC_006151.1 + 78500 0.71 0.362113
Target:  5'- cGCCGCCGUGGuGCAcGCCCCcGCgaucgCGg -3'
miRNA:   3'- uCGGUGGUACU-CGU-CGGGGuCGa----GCa -5'
29507 5' -60.2 NC_006151.1 + 56535 0.71 0.362113
Target:  5'- cGCCGCC--GGGUucgGGCCCCuGCUCGg -3'
miRNA:   3'- uCGGUGGuaCUCG---UCGGGGuCGAGCa -5'
29507 5' -60.2 NC_006151.1 + 86548 0.71 0.370094
Target:  5'- aGGCCGCCGUGgcgccguuccGGCAGCuCUCGGCgCGg -3'
miRNA:   3'- -UCGGUGGUAC----------UCGUCG-GGGUCGaGCa -5'
29507 5' -60.2 NC_006151.1 + 73914 0.71 0.386415
Target:  5'- aGGCCAUCAUGAGCAGgCCguggugCAGCgagccgUCGUg -3'
miRNA:   3'- -UCGGUGGUACUCGUCgGG------GUCG------AGCA- -5'
29507 5' -60.2 NC_006151.1 + 51867 0.71 0.386415
Target:  5'- aGGUgGCCAUGucCAGCUCCAGgUCGUc -3'
miRNA:   3'- -UCGgUGGUACucGUCGGGGUCgAGCA- -5'
29507 5' -60.2 NC_006151.1 + 70803 0.71 0.386415
Target:  5'- uGGCCGUCGUGGGCAGCUaCCGGCgcagcuggaUCGUg -3'
miRNA:   3'- -UCGGUGGUACUCGUCGG-GGUCG---------AGCA- -5'
29507 5' -60.2 NC_006151.1 + 66454 0.71 0.394751
Target:  5'- uGCCACCAgacGGUGGUCCCGGCggUCGg -3'
miRNA:   3'- uCGGUGGUac-UCGUCGGGGUCG--AGCa -5'
29507 5' -60.2 NC_006151.1 + 86833 0.7 0.420445
Target:  5'- uGCgGCCAUG-GCAGCCCC-GC-CGa -3'
miRNA:   3'- uCGgUGGUACuCGUCGGGGuCGaGCa -5'
29507 5' -60.2 NC_006151.1 + 132109 0.7 0.420445
Target:  5'- aGGCCGgCGcgcacGAGCGGCaggCCCAGCUCGc -3'
miRNA:   3'- -UCGGUgGUa----CUCGUCG---GGGUCGAGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.