miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29507 5' -60.2 NC_006151.1 + 2320 0.72 0.346512
Target:  5'- cAG-CACCAgcgGGGCGGCCUCGGCgUCGg -3'
miRNA:   3'- -UCgGUGGUa--CUCGUCGGGGUCG-AGCa -5'
29507 5' -60.2 NC_006151.1 + 5876 0.67 0.592143
Target:  5'- gGGCCGCC---GGgGGCCCCGGcCUCu- -3'
miRNA:   3'- -UCGGUGGuacUCgUCGGGGUC-GAGca -5'
29507 5' -60.2 NC_006151.1 + 6146 0.7 0.456225
Target:  5'- cGGCCGCgAggacGGCGGCCUCGGcCUCGg -3'
miRNA:   3'- -UCGGUGgUac--UCGUCGGGGUC-GAGCa -5'
29507 5' -60.2 NC_006151.1 + 6302 0.69 0.474719
Target:  5'- cGGCCGCCAgGAGCuggcugaaguuGCCCuCGGuCUCGa -3'
miRNA:   3'- -UCGGUGGUaCUCGu----------CGGG-GUC-GAGCa -5'
29507 5' -60.2 NC_006151.1 + 10984 0.72 0.346512
Target:  5'- uGUCACgGUgGAGCgggccgggGGCCCCGGCUCGc -3'
miRNA:   3'- uCGGUGgUA-CUCG--------UCGGGGUCGAGCa -5'
29507 5' -60.2 NC_006151.1 + 12286 0.66 0.673268
Target:  5'- gGGCCcauucACCAUcgccGCGGUCCgAGCUCGg -3'
miRNA:   3'- -UCGG-----UGGUAcu--CGUCGGGgUCGAGCa -5'
29507 5' -60.2 NC_006151.1 + 14624 0.67 0.580042
Target:  5'- cAGCCACCcccacccgucgGGGCGG-CCgGGCUCGg -3'
miRNA:   3'- -UCGGUGGua---------CUCGUCgGGgUCGAGCa -5'
29507 5' -60.2 NC_006151.1 + 15645 0.66 0.677303
Target:  5'- gGGCCAgCGUGGGCgAcgacgacguguuugaGCCCCccgaggacGGCUCGg -3'
miRNA:   3'- -UCGGUgGUACUCG-U---------------CGGGG--------UCGAGCa -5'
29507 5' -60.2 NC_006151.1 + 17316 0.67 0.60226
Target:  5'- cGuCCGCCGggGGGCGccGCgUCAGCUCGUg -3'
miRNA:   3'- uC-GGUGGUa-CUCGU--CGgGGUCGAGCA- -5'
29507 5' -60.2 NC_006151.1 + 18871 0.67 0.582055
Target:  5'- gGGUCAUCAcGAGCacguacAGCCCCGaCUCGUc -3'
miRNA:   3'- -UCGGUGGUaCUCG------UCGGGGUcGAGCA- -5'
29507 5' -60.2 NC_006151.1 + 21901 1.06 0.00136
Target:  5'- gAGCCACCAUGAGCAGCCCCAGCUCGUc -3'
miRNA:   3'- -UCGGUGGUACUCGUCGGGGUCGAGCA- -5'
29507 5' -60.2 NC_006151.1 + 28276 0.67 0.612398
Target:  5'- gGGCC-CCGggGAcGCGGgCCCGGCUCc- -3'
miRNA:   3'- -UCGGuGGUa-CU-CGUCgGGGUCGAGca -5'
29507 5' -60.2 NC_006151.1 + 28836 0.67 0.612398
Target:  5'- gGGCC-CCGggGAcGCGGgCCCGGCUCc- -3'
miRNA:   3'- -UCGGuGGUa-CU-CGUCgGGGUCGAGca -5'
29507 5' -60.2 NC_006151.1 + 33210 0.7 0.429232
Target:  5'- cGCC-CCcgGAGCAcgcggggcGCCCCGGCgggCGg -3'
miRNA:   3'- uCGGuGGuaCUCGU--------CGGGGUCGa--GCa -5'
29507 5' -60.2 NC_006151.1 + 36114 0.68 0.532273
Target:  5'- aGGCCGCCGUccucGCGGCCgCGGC-CGg -3'
miRNA:   3'- -UCGGUGGUAcu--CGUCGGgGUCGaGCa -5'
29507 5' -60.2 NC_006151.1 + 36168 0.67 0.632711
Target:  5'- cGGcCCAgCAgcaGcAGCAGCCCCgccggGGCUCGg -3'
miRNA:   3'- -UC-GGUgGUa--C-UCGUCGGGG-----UCGAGCa -5'
29507 5' -60.2 NC_006151.1 + 36390 0.69 0.465424
Target:  5'- gGGCC-CCc--GGCGGCCCCGggcGCUCGUc -3'
miRNA:   3'- -UCGGuGGuacUCGUCGGGGU---CGAGCA- -5'
29507 5' -60.2 NC_006151.1 + 36680 0.67 0.582055
Target:  5'- cGUCACCAUcaccAGCaccgcgAGCCCCuGCUCGa -3'
miRNA:   3'- uCGGUGGUAc---UCG------UCGGGGuCGAGCa -5'
29507 5' -60.2 NC_006151.1 + 38269 0.68 0.52249
Target:  5'- cGGCCAaCGUGGccGCGG-CCCGGCUCGc -3'
miRNA:   3'- -UCGGUgGUACU--CGUCgGGGUCGAGCa -5'
29507 5' -60.2 NC_006151.1 + 38299 0.68 0.561992
Target:  5'- aGGCCGCCGc--GCGGCCCgGGCccgCGg -3'
miRNA:   3'- -UCGGUGGUacuCGUCGGGgUCGa--GCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.