miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29508 3' -59.4 NC_006151.1 + 141737 0.65 0.807386
Target:  5'- cCCAGGgcggaggggcgcgGGGCGcgcGCCCCgguggcgUCGCCgguucuguCCCg -3'
miRNA:   3'- -GGUCC-------------UCCGCua-UGGGGa------AGCGG--------GGG- -5'
29508 3' -59.4 NC_006151.1 + 71413 0.65 0.80653
Target:  5'- -gGGGAGGaCGGgcgcccccCCCCUcccggggccaccCGCCCCCc -3'
miRNA:   3'- ggUCCUCC-GCUau------GGGGAa-----------GCGGGGG- -5'
29508 3' -59.4 NC_006151.1 + 39963 0.66 0.803091
Target:  5'- cCCGGGcgccgucgccgccgcGGGCGccccgccggccGUGCUCugggaCUUUGCCCCCu -3'
miRNA:   3'- -GGUCC---------------UCCGC-----------UAUGGG-----GAAGCGGGGG- -5'
29508 3' -59.4 NC_006151.1 + 48798 0.66 0.799629
Target:  5'- aCCccGGGGCGcccacgugggACgCCUUCGCCgCCg -3'
miRNA:   3'- -GGucCUCCGCua--------UGgGGAAGCGGgGG- -5'
29508 3' -59.4 NC_006151.1 + 101783 0.66 0.799629
Target:  5'- gCCccGGGGCc--AUCCCguccucgccgUCGCCCCCg -3'
miRNA:   3'- -GGucCUCCGcuaUGGGGa---------AGCGGGGG- -5'
29508 3' -59.4 NC_006151.1 + 108681 0.66 0.799629
Target:  5'- gCCGGaGcGGCGGcccgagcACCuCCUggaGCCCCCg -3'
miRNA:   3'- -GGUC-CuCCGCUa------UGG-GGAag-CGGGGG- -5'
29508 3' -59.4 NC_006151.1 + 139446 0.66 0.799629
Target:  5'- aCGGGuuaaAGGC---GCCCCgcCGCCCgCCa -3'
miRNA:   3'- gGUCC----UCCGcuaUGGGGaaGCGGG-GG- -5'
29508 3' -59.4 NC_006151.1 + 15928 0.66 0.799629
Target:  5'- cCCGuGAGGCGGgccucGCCCCgcgcuguucuUUCcuCCCCCa -3'
miRNA:   3'- -GGUcCUCCGCUa----UGGGG----------AAGc-GGGGG- -5'
29508 3' -59.4 NC_006151.1 + 36515 0.66 0.799629
Target:  5'- cCCGGGccGGCGGcgcggccucggACCCCggCGCCaCCa -3'
miRNA:   3'- -GGUCCu-CCGCUa----------UGGGGaaGCGGgGG- -5'
29508 3' -59.4 NC_006151.1 + 9647 0.66 0.799629
Target:  5'- -gGGaGAGGCGcgGCgCCCcgCGCuuCCCCu -3'
miRNA:   3'- ggUC-CUCCGCuaUG-GGGaaGCG--GGGG- -5'
29508 3' -59.4 NC_006151.1 + 44148 0.66 0.797017
Target:  5'- aCCGGGuuGUGAgugggaacgUGCCCCUgggagcaccgcgggUCGCCgUCCg -3'
miRNA:   3'- -GGUCCucCGCU---------AUGGGGA--------------AGCGG-GGG- -5'
29508 3' -59.4 NC_006151.1 + 137926 0.66 0.790875
Target:  5'- gCCAcG-GGCGccugcuCCCCUUuggggacgCGCCCCCg -3'
miRNA:   3'- -GGUcCuCCGCuau---GGGGAA--------GCGGGGG- -5'
29508 3' -59.4 NC_006151.1 + 107878 0.66 0.790875
Target:  5'- cCCcGGAGGCcccccagGCCCagcCGCCCgCCg -3'
miRNA:   3'- -GGuCCUCCGcua----UGGGgaaGCGGG-GG- -5'
29508 3' -59.4 NC_006151.1 + 125197 0.66 0.790875
Target:  5'- gCCGGcGucGUGG-GCCCCgcgGCCCCCg -3'
miRNA:   3'- -GGUC-CucCGCUaUGGGGaagCGGGGG- -5'
29508 3' -59.4 NC_006151.1 + 49434 0.66 0.790875
Target:  5'- -uGGaGAGGCGAacgcgUACCUCgUCcagacgggccggGCCCCCg -3'
miRNA:   3'- ggUC-CUCCGCU-----AUGGGGaAG------------CGGGGG- -5'
29508 3' -59.4 NC_006151.1 + 8691 0.66 0.781987
Target:  5'- gCCGGGcGGGCGGUcuCUCCgucucCGUCUCCg -3'
miRNA:   3'- -GGUCC-UCCGCUAu-GGGGaa---GCGGGGG- -5'
29508 3' -59.4 NC_006151.1 + 38238 0.66 0.781987
Target:  5'- gCCuGGAccuacGcCGcgGCCCuCUUCGCCCCg -3'
miRNA:   3'- -GGuCCUc----C-GCuaUGGG-GAAGCGGGGg -5'
29508 3' -59.4 NC_006151.1 + 90492 0.66 0.781987
Target:  5'- gCCGGGGcGGCaac-CCCCUcCGUUCCCc -3'
miRNA:   3'- -GGUCCU-CCGcuauGGGGAaGCGGGGG- -5'
29508 3' -59.4 NC_006151.1 + 130721 0.66 0.781987
Target:  5'- cCCGGGGGcccGCGcgGCCgCggcgcagCGCCaCCCa -3'
miRNA:   3'- -GGUCCUC---CGCuaUGGgGaa-----GCGG-GGG- -5'
29508 3' -59.4 NC_006151.1 + 87675 0.66 0.773879
Target:  5'- -gAGGAGGCc--GCCCCgcucccuucccgccCGCCCCg -3'
miRNA:   3'- ggUCCUCCGcuaUGGGGaa------------GCGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.