miRNA display CGI


Results 41 - 60 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29512 5' -57.4 NC_006151.1 + 17093 0.7 0.627633
Target:  5'- aGGCGC-GCGCCcgucgGGGCGCCGggggCUc -3'
miRNA:   3'- aCCGCGcCGCGGa----UCUGUGGCaaa-GA- -5'
29512 5' -57.4 NC_006151.1 + 136592 0.7 0.637851
Target:  5'- cGcGCGCGGCuccgcgagcaCCUGGACGCCGUcaacgUCa -3'
miRNA:   3'- aC-CGCGCCGc---------GGAUCUGUGGCAa----AGa -5'
29512 5' -57.4 NC_006151.1 + 130493 0.7 0.637851
Target:  5'- aGcGCGCGGCGCCac-ACGCCGcgcgUCUc -3'
miRNA:   3'- aC-CGCGCCGCGGaucUGUGGCaa--AGA- -5'
29512 5' -57.4 NC_006151.1 + 106680 0.69 0.648065
Target:  5'- cGGCGCucGGCGCgCcGGGCGCCGg--Cg -3'
miRNA:   3'- aCCGCG--CCGCG-GaUCUGUGGCaaaGa -5'
29512 5' -57.4 NC_006151.1 + 129054 0.69 0.658266
Target:  5'- cGGUGCGGCuccGCCgAGcACGCCGUgaUCa -3'
miRNA:   3'- aCCGCGCCG---CGGaUC-UGUGGCAa-AGa -5'
29512 5' -57.4 NC_006151.1 + 128555 0.69 0.662341
Target:  5'- cGGCGCGGUGCCgcccAaagagcgccucgggcGACAUCGUcUCg -3'
miRNA:   3'- aCCGCGCCGCGGa---U---------------CUGUGGCAaAGa -5'
29512 5' -57.4 NC_006151.1 + 105756 0.69 0.668446
Target:  5'- gUGGCG-GcGCGCCUGGGCgACCGcgacgUCa -3'
miRNA:   3'- -ACCGCgC-CGCGGAUCUG-UGGCaa---AGa -5'
29512 5' -57.4 NC_006151.1 + 21974 0.69 0.668446
Target:  5'- gUGGUGCGGCGCCggcaGCGCCcaaagaUCUg -3'
miRNA:   3'- -ACCGCGCCGCGGauc-UGUGGcaa---AGA- -5'
29512 5' -57.4 NC_006151.1 + 55394 0.69 0.675556
Target:  5'- aGGUGCGGCGCCUGcGcgagcaggcccugcGCGCCGc---- -3'
miRNA:   3'- aCCGCGCCGCGGAU-C--------------UGUGGCaaaga -5'
29512 5' -57.4 NC_006151.1 + 105378 0.69 0.678597
Target:  5'- cUGGCGCuGCGCagcGACGCCGUc--- -3'
miRNA:   3'- -ACCGCGcCGCGgauCUGUGGCAaaga -5'
29512 5' -57.4 NC_006151.1 + 119483 0.69 0.678597
Target:  5'- gUGGC-CGGCaGCCUcGACGCCGaggUCc -3'
miRNA:   3'- -ACCGcGCCG-CGGAuCUGUGGCaa-AGa -5'
29512 5' -57.4 NC_006151.1 + 36908 0.69 0.68871
Target:  5'- cGGCGCcGCGCCggagAGGCGCCc----- -3'
miRNA:   3'- aCCGCGcCGCGGa---UCUGUGGcaaaga -5'
29512 5' -57.4 NC_006151.1 + 111443 0.69 0.68871
Target:  5'- cGGCGCGGU-CCaggAGGCGCUGcgUCUg -3'
miRNA:   3'- aCCGCGCCGcGGa--UCUGUGGCaaAGA- -5'
29512 5' -57.4 NC_006151.1 + 123763 0.69 0.68871
Target:  5'- uUGGCGCGG-GCCccggGGGCAUCGg---- -3'
miRNA:   3'- -ACCGCGCCgCGGa---UCUGUGGCaaaga -5'
29512 5' -57.4 NC_006151.1 + 104594 0.69 0.68871
Target:  5'- aGGCcgGCGGCaGCCgcGGCGCCGagaUCUg -3'
miRNA:   3'- aCCG--CGCCG-CGGauCUGUGGCaa-AGA- -5'
29512 5' -57.4 NC_006151.1 + 5080 0.68 0.698776
Target:  5'- gGGcCGCGGgGCCgcggcGGGCGCCGg--Cg -3'
miRNA:   3'- aCC-GCGCCgCGGa----UCUGUGGCaaaGa -5'
29512 5' -57.4 NC_006151.1 + 66881 0.68 0.698776
Target:  5'- gGGCGCGcccggccccGCGCCggaGGACGCCGc---- -3'
miRNA:   3'- aCCGCGC---------CGCGGa--UCUGUGGCaaaga -5'
29512 5' -57.4 NC_006151.1 + 123338 0.68 0.698776
Target:  5'- cGGUGCaGCGCCaccccgUGGACGCCGcg-CUc -3'
miRNA:   3'- aCCGCGcCGCGG------AUCUGUGGCaaaGA- -5'
29512 5' -57.4 NC_006151.1 + 106635 0.68 0.698776
Target:  5'- cGGUcacCGaGCGCCUGGACGCCGcggCg -3'
miRNA:   3'- aCCGc--GC-CGCGGAUCUGUGGCaaaGa -5'
29512 5' -57.4 NC_006151.1 + 16977 0.68 0.698776
Target:  5'- cGGCGUGGCGCCaggagcgguugUGGAC-CCGc---- -3'
miRNA:   3'- aCCGCGCCGCGG-----------AUCUGuGGCaaaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.