miRNA display CGI


Results 41 - 60 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29512 5' -57.4 NC_006151.1 + 53971 0.67 0.803817
Target:  5'- cGGCgGCGGCGCCUccgcGGGCGUCGcggCg -3'
miRNA:   3'- aCCG-CGCCGCGGA----UCUGUGGCaaaGa -5'
29512 5' -57.4 NC_006151.1 + 9652 0.67 0.785768
Target:  5'- aGGCGCGGCGCCcc-GCGCUu----- -3'
miRNA:   3'- aCCGCGCCGCGGaucUGUGGcaaaga -5'
29512 5' -57.4 NC_006151.1 + 2805 0.67 0.785768
Target:  5'- -aGCGCacGGCGCaCUGGGCgGCCGggUCc -3'
miRNA:   3'- acCGCG--CCGCG-GAUCUG-UGGCaaAGa -5'
29512 5' -57.4 NC_006151.1 + 64638 0.67 0.785768
Target:  5'- gGGCGCGGCGCCccgcgcAGGaACCGc---- -3'
miRNA:   3'- aCCGCGCCGCGGa-----UCUgUGGCaaaga -5'
29512 5' -57.4 NC_006151.1 + 103062 0.67 0.785768
Target:  5'- aGGCGCaGGCGCacGGGCACCu----- -3'
miRNA:   3'- aCCGCG-CCGCGgaUCUGUGGcaaaga -5'
29512 5' -57.4 NC_006151.1 + 5124 0.67 0.785768
Target:  5'- cGGCGCgGGCGagugGGGCGCCGg---- -3'
miRNA:   3'- aCCGCG-CCGCgga-UCUGUGGCaaaga -5'
29512 5' -57.4 NC_006151.1 + 85634 0.67 0.785768
Target:  5'- -cGCGCGGCGCCagcggGGACGcgcCCGccUCg -3'
miRNA:   3'- acCGCGCCGCGGa----UCUGU---GGCaaAGa -5'
29512 5' -57.4 NC_006151.1 + 125258 0.67 0.785768
Target:  5'- cGGCGgGGaCGCCcgAGcCGCCGgccgUCa -3'
miRNA:   3'- aCCGCgCC-GCGGa-UCuGUGGCaa--AGa -5'
29512 5' -57.4 NC_006151.1 + 63756 0.67 0.776532
Target:  5'- cGGCGgGGCGuCCUcGGCGCCcccgcgUCg -3'
miRNA:   3'- aCCGCgCCGC-GGAuCUGUGGcaa---AGa -5'
29512 5' -57.4 NC_006151.1 + 85888 0.67 0.776532
Target:  5'- aGGUcaucGCGGCGCac-GACGCCGUg--- -3'
miRNA:   3'- aCCG----CGCCGCGgauCUGUGGCAaaga -5'
29512 5' -57.4 NC_006151.1 + 49253 0.67 0.776532
Target:  5'- gGGCGCGGCuCgUGcGCGCCGUcgUCc -3'
miRNA:   3'- aCCGCGCCGcGgAUcUGUGGCAa-AGa -5'
29512 5' -57.4 NC_006151.1 + 76092 0.67 0.767168
Target:  5'- aGGgGCGGCGCCUucuccaucaGGACGCgcaGcaUCUg -3'
miRNA:   3'- aCCgCGCCGCGGA---------UCUGUGg--CaaAGA- -5'
29512 5' -57.4 NC_006151.1 + 52463 0.67 0.767168
Target:  5'- cGGCGgccaGGCGCCggUAGGcCGCCGUg--- -3'
miRNA:   3'- aCCGCg---CCGCGG--AUCU-GUGGCAaaga -5'
29512 5' -57.4 NC_006151.1 + 84661 0.67 0.767168
Target:  5'- gGGCGC-GCGCCUcGAgGCCGa---- -3'
miRNA:   3'- aCCGCGcCGCGGAuCUgUGGCaaaga -5'
29512 5' -57.4 NC_006151.1 + 97999 0.67 0.767168
Target:  5'- cGGCGUGGcCGCgUAGGCggcGCCGg---- -3'
miRNA:   3'- aCCGCGCC-GCGgAUCUG---UGGCaaaga -5'
29512 5' -57.4 NC_006151.1 + 123910 0.67 0.767168
Target:  5'- cGGCGCGGCGgCCguGACGCgGg---- -3'
miRNA:   3'- aCCGCGCCGC-GGauCUGUGgCaaaga -5'
29512 5' -57.4 NC_006151.1 + 106773 0.67 0.757684
Target:  5'- cGcGCGUGaGCGCCUGGACcugGCCGcggCg -3'
miRNA:   3'- aC-CGCGC-CGCGGAUCUG---UGGCaaaGa -5'
29512 5' -57.4 NC_006151.1 + 103169 0.67 0.757684
Target:  5'- cUGGCGCGcuucgaCGCCaUGGACGCCGc---- -3'
miRNA:   3'- -ACCGCGCc-----GCGG-AUCUGUGGCaaaga -5'
29512 5' -57.4 NC_006151.1 + 10528 0.67 0.757684
Target:  5'- cGGCGCgGGCGCCUcuccACGCCccgUUCc -3'
miRNA:   3'- aCCGCG-CCGCGGAuc--UGUGGca-AAGa -5'
29512 5' -57.4 NC_006151.1 + 120769 0.67 0.757684
Target:  5'- gGGUGCGGCGCCcgcuggcGGACgcgGCCGa---- -3'
miRNA:   3'- aCCGCGCCGCGGa------UCUG---UGGCaaaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.