miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29512 5' -57.4 NC_006151.1 + 83625 0.66 0.837992
Target:  5'- cGGCGUcgcgaaGGCgGCCUGGugcuGCGCCGUg--- -3'
miRNA:   3'- aCCGCG------CCG-CGGAUC----UGUGGCAaaga -5'
29512 5' -57.4 NC_006151.1 + 118798 0.66 0.832213
Target:  5'- cGGCGCGGCgcaccugGCCUucgacgagaaccacgAGAgCGCCGUg--- -3'
miRNA:   3'- aCCGCGCCG-------CGGA---------------UCU-GUGGCAaaga -5'
29512 5' -57.4 NC_006151.1 + 57614 0.66 0.829709
Target:  5'- cGGcCGCGGcCGCCUcgacggcgcgcgAGACcCCGUUg-- -3'
miRNA:   3'- aCC-GCGCC-GCGGA------------UCUGuGGCAAaga -5'
29512 5' -57.4 NC_006151.1 + 69141 0.66 0.829709
Target:  5'- gGGCGCgcgGGUGCUc-GACGCCGUgccgCUc -3'
miRNA:   3'- aCCGCG---CCGCGGauCUGUGGCAaa--GA- -5'
29512 5' -57.4 NC_006151.1 + 107036 0.66 0.829709
Target:  5'- cGGCGCGGCcCCUGGccggcgaGCCGg---- -3'
miRNA:   3'- aCCGCGCCGcGGAUCug-----UGGCaaaga -5'
29512 5' -57.4 NC_006151.1 + 15050 0.66 0.821248
Target:  5'- gGcGCGCGGgGCCccGGCGCC--UUCUg -3'
miRNA:   3'- aC-CGCGCCgCGGauCUGUGGcaAAGA- -5'
29512 5' -57.4 NC_006151.1 + 15085 0.66 0.821248
Target:  5'- cUGGCgccccgacacGCGGCGCCUcGGgGCCGa---- -3'
miRNA:   3'- -ACCG----------CGCCGCGGAuCUgUGGCaaaga -5'
29512 5' -57.4 NC_006151.1 + 71229 0.66 0.821248
Target:  5'- gGGCGCGcGCGCC--GACcCCGUc--- -3'
miRNA:   3'- aCCGCGC-CGCGGauCUGuGGCAaaga -5'
29512 5' -57.4 NC_006151.1 + 39294 0.66 0.821248
Target:  5'- cGGCGCGGgaccucggcuuCGCC--GGCGCCGUg--- -3'
miRNA:   3'- aCCGCGCC-----------GCGGauCUGUGGCAaaga -5'
29512 5' -57.4 NC_006151.1 + 84783 0.66 0.821248
Target:  5'- cGGCGCGcGcCGCCgaggAGGCGCCc----- -3'
miRNA:   3'- aCCGCGC-C-GCGGa---UCUGUGGcaaaga -5'
29512 5' -57.4 NC_006151.1 + 86422 0.66 0.821248
Target:  5'- cGGCgucccuguccucGCGGCGCCUGG-CGCCc----- -3'
miRNA:   3'- aCCG------------CGCCGCGGAUCuGUGGcaaaga -5'
29512 5' -57.4 NC_006151.1 + 98463 0.66 0.821248
Target:  5'- cUGGCGCuguGGCGCCU--GCGCCa----- -3'
miRNA:   3'- -ACCGCG---CCGCGGAucUGUGGcaaaga -5'
29512 5' -57.4 NC_006151.1 + 86601 0.66 0.812614
Target:  5'- cUGGCGC-GCGCCgccgAGuCGCCGg---- -3'
miRNA:   3'- -ACCGCGcCGCGGa---UCuGUGGCaaaga -5'
29512 5' -57.4 NC_006151.1 + 86728 0.66 0.812614
Target:  5'- cGGCGCGcCGCCgcGAgGCCGg--Cg -3'
miRNA:   3'- aCCGCGCcGCGGauCUgUGGCaaaGa -5'
29512 5' -57.4 NC_006151.1 + 105711 0.66 0.812614
Target:  5'- cGGC-CGcGCGCCUcgacGGCGCCGUgcgCg -3'
miRNA:   3'- aCCGcGC-CGCGGAu---CUGUGGCAaa-Ga -5'
29512 5' -57.4 NC_006151.1 + 118883 0.66 0.812614
Target:  5'- cGGCGCGGCGgCgacgcGGcCGCCGg--Cg -3'
miRNA:   3'- aCCGCGCCGCgGa----UCuGUGGCaaaGa -5'
29512 5' -57.4 NC_006151.1 + 136999 0.66 0.812614
Target:  5'- gGGCGCGcGCGCacggcgCUGGGCGCCc----- -3'
miRNA:   3'- aCCGCGC-CGCG------GAUCUGUGGcaaaga -5'
29512 5' -57.4 NC_006151.1 + 104271 0.67 0.803817
Target:  5'- cGGCGCGGCGgC-GGGC-CCGccgCUg -3'
miRNA:   3'- aCCGCGCCGCgGaUCUGuGGCaaaGA- -5'
29512 5' -57.4 NC_006151.1 + 78136 0.67 0.803817
Target:  5'- gGGcCGCgGGCGCCUcGGACgacgccucggccGCCGUggUCg -3'
miRNA:   3'- aCC-GCG-CCGCGGA-UCUG------------UGGCAa-AGa -5'
29512 5' -57.4 NC_006151.1 + 53971 0.67 0.803817
Target:  5'- cGGCgGCGGCGCCUccgcGGGCGUCGcggCg -3'
miRNA:   3'- aCCG-CGCCGCGGA----UCUGUGGCaaaGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.