miRNA display CGI


Results 61 - 80 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29512 5' -57.4 NC_006151.1 + 130683 0.68 0.748089
Target:  5'- gGGCGCGGCGCa-GGAUGuCCGg---- -3'
miRNA:   3'- aCCGCGCCGCGgaUCUGU-GGCaaaga -5'
29512 5' -57.4 NC_006151.1 + 139620 0.68 0.748089
Target:  5'- gGGCGCGGCuggggGCCauccGGCGCCGgcgCg -3'
miRNA:   3'- aCCGCGCCG-----CGGau--CUGUGGCaaaGa -5'
29512 5' -57.4 NC_006151.1 + 113901 0.68 0.748089
Target:  5'- -cGCGCGGCGCa-AGACGCUGa---- -3'
miRNA:   3'- acCGCGCCGCGgaUCUGUGGCaaaga -5'
29512 5' -57.4 NC_006151.1 + 3278 0.68 0.738393
Target:  5'- cGGCGaUGuGCGCCaGGGCgGCCGggUCg -3'
miRNA:   3'- aCCGC-GC-CGCGGaUCUG-UGGCaaAGa -5'
29512 5' -57.4 NC_006151.1 + 124045 0.68 0.728604
Target:  5'- cGGCGaguaCGGCGaCCUGGACGCgCGg---- -3'
miRNA:   3'- aCCGC----GCCGC-GGAUCUGUG-GCaaaga -5'
29512 5' -57.4 NC_006151.1 + 119120 0.68 0.728604
Target:  5'- -cGCGCGGCcgGCCUcguggGGGCGCUGgugUUCa -3'
miRNA:   3'- acCGCGCCG--CGGA-----UCUGUGGCa--AAGa -5'
29512 5' -57.4 NC_006151.1 + 103637 0.68 0.728604
Target:  5'- gUGGCgGCGGCGCUggcGGACGCgGa---- -3'
miRNA:   3'- -ACCG-CGCCGCGGa--UCUGUGgCaaaga -5'
29512 5' -57.4 NC_006151.1 + 102337 0.68 0.728604
Target:  5'- aGGCGCGcGCGCugCUGGACgugGCCGg--Cg -3'
miRNA:   3'- aCCGCGC-CGCG--GAUCUG---UGGCaaaGa -5'
29512 5' -57.4 NC_006151.1 + 90738 0.68 0.728604
Target:  5'- gUGGCgGCGGCGCCcucggGGGCGgCGgg-Ca -3'
miRNA:   3'- -ACCG-CGCCGCGGa----UCUGUgGCaaaGa -5'
29512 5' -57.4 NC_006151.1 + 100338 0.68 0.718733
Target:  5'- gGGCacGUGGCGUCUggcggacgucguGGACGCCGUgggCg -3'
miRNA:   3'- aCCG--CGCCGCGGA------------UCUGUGGCAaa-Ga -5'
29512 5' -57.4 NC_006151.1 + 3888 0.68 0.718733
Target:  5'- cGGCGcCGGCGCUgGGACgacgagGCCGgg-CUg -3'
miRNA:   3'- aCCGC-GCCGCGGaUCUG------UGGCaaaGA- -5'
29512 5' -57.4 NC_006151.1 + 96589 0.68 0.718733
Target:  5'- cGGCGCgaGGCGCCgggcgcgGGcGCGCCGacgUCg -3'
miRNA:   3'- aCCGCG--CCGCGGa------UC-UGUGGCaa-AGa -5'
29512 5' -57.4 NC_006151.1 + 122663 0.68 0.718733
Target:  5'- cGGCGCGaGCGCC---GCGCCGa---- -3'
miRNA:   3'- aCCGCGC-CGCGGaucUGUGGCaaaga -5'
29512 5' -57.4 NC_006151.1 + 142916 0.68 0.718733
Target:  5'- cGGCGCGG-GCaccGACACCGUc--- -3'
miRNA:   3'- aCCGCGCCgCGgauCUGUGGCAaaga -5'
29512 5' -57.4 NC_006151.1 + 83812 0.68 0.717741
Target:  5'- gUGGUGCucuugccGGUGCCgAGGCGCCGUc--- -3'
miRNA:   3'- -ACCGCG-------CCGCGGaUCUGUGGCAaaga -5'
29512 5' -57.4 NC_006151.1 + 52855 0.68 0.712774
Target:  5'- aGGUGCGGCugcugcgugGCCUcgcgguaccggucgaAGGCGCCGUgcgCa -3'
miRNA:   3'- aCCGCGCCG---------CGGA---------------UCUGUGGCAaa-Ga -5'
29512 5' -57.4 NC_006151.1 + 112602 0.68 0.708787
Target:  5'- aGGCcgccGCGGCGCCgcuGGCGCUGg---- -3'
miRNA:   3'- aCCG----CGCCGCGGau-CUGUGGCaaaga -5'
29512 5' -57.4 NC_006151.1 + 21414 0.68 0.708787
Target:  5'- cGGUGCGGCGUCUcGGGCcUCGggggUCg -3'
miRNA:   3'- aCCGCGCCGCGGA-UCUGuGGCaa--AGa -5'
29512 5' -57.4 NC_006151.1 + 2232 0.68 0.708787
Target:  5'- cGGCgGCGGCGC--GGACGCUGgucUCg -3'
miRNA:   3'- aCCG-CGCCGCGgaUCUGUGGCaa-AGa -5'
29512 5' -57.4 NC_006151.1 + 96873 0.68 0.707788
Target:  5'- gGGCGCGGCGCgCgcggGGGCAUgaugggaUGUgUCUg -3'
miRNA:   3'- aCCGCGCCGCG-Ga---UCUGUG-------GCAaAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.