miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29513 3' -48.2 NC_006151.1 + 9850 1.07 0.016579
Target:  5'- cUUACCGAGAGAGGAGAAUAAGAAGCAg -3'
miRNA:   3'- -AAUGGCUCUCUCCUCUUAUUCUUCGU- -5'
29513 3' -48.2 NC_006151.1 + 33472 0.81 0.499264
Target:  5'- -aGgCGAGAGAGGAGGAgaaggAGGAGGCGa -3'
miRNA:   3'- aaUgGCUCUCUCCUCUUa----UUCUUCGU- -5'
29513 3' -48.2 NC_006151.1 + 27814 0.8 0.57405
Target:  5'- --cCCGGGGGAGGGGAGggggGAGGAGCc -3'
miRNA:   3'- aauGGCUCUCUCCUCUUa---UUCUUCGu -5'
29513 3' -48.2 NC_006151.1 + 93416 0.77 0.716588
Target:  5'- uUUGCCgcagaGAGAGAGGAGGA-GGGggGCGa -3'
miRNA:   3'- -AAUGG-----CUCUCUCCUCUUaUUCuuCGU- -5'
29513 3' -48.2 NC_006151.1 + 34379 0.77 0.737861
Target:  5'- -gACCGGGAGAGaGAGAuaGAGggGUg -3'
miRNA:   3'- aaUGGCUCUCUC-CUCUuaUUCuuCGu -5'
29513 3' -48.2 NC_006151.1 + 29446 0.76 0.768936
Target:  5'- -gGCgGGGAGAGGGGAcgcggAGGGAGCGg -3'
miRNA:   3'- aaUGgCUCUCUCCUCUua---UUCUUCGU- -5'
29513 3' -48.2 NC_006151.1 + 33344 0.76 0.768936
Target:  5'- -gGCgGGGAGAGGAGAGgagGAGAGGa- -3'
miRNA:   3'- aaUGgCUCUCUCCUCUUa--UUCUUCgu -5'
29513 3' -48.2 NC_006151.1 + 5811 0.75 0.824215
Target:  5'- cUGCCGAGgggccgggagagccGGAGGAGGAggccgGGGAGGCu -3'
miRNA:   3'- aAUGGCUC--------------UCUCCUCUUa----UUCUUCGu -5'
29513 3' -48.2 NC_006151.1 + 43924 0.74 0.869755
Target:  5'- -gGaaGAGAGAGGAGGGaGAGggGCc -3'
miRNA:   3'- aaUggCUCUCUCCUCUUaUUCuuCGu -5'
29513 3' -48.2 NC_006151.1 + 45316 0.74 0.869755
Target:  5'- -gGCCGGGAGgcuGGGAGggUGgcgguggaggacGGGAGCGu -3'
miRNA:   3'- aaUGGCUCUC---UCCUCuuAU------------UCUUCGU- -5'
29513 3' -48.2 NC_006151.1 + 29387 0.74 0.869755
Target:  5'- ----gGGGAGAGGAGAG-GAGAGGCGg -3'
miRNA:   3'- aauggCUCUCUCCUCUUaUUCUUCGU- -5'
29513 3' -48.2 NC_006151.1 + 71548 0.74 0.885189
Target:  5'- aUUugCGAGGGAGGGGGGggcgAGGggGaCGg -3'
miRNA:   3'- -AAugGCUCUCUCCUCUUa---UUCuuC-GU- -5'
29513 3' -48.2 NC_006151.1 + 15601 0.74 0.885189
Target:  5'- -gGCCGAGGacGAGGAGGAcGAGGAGg- -3'
miRNA:   3'- aaUGGCUCU--CUCCUCUUaUUCUUCgu -5'
29513 3' -48.2 NC_006151.1 + 9621 0.73 0.892518
Target:  5'- -gGCCGGcggcGAGGGGGGAAgcgggaggGAGAGGCGc -3'
miRNA:   3'- aaUGGCU----CUCUCCUCUUa-------UUCUUCGU- -5'
29513 3' -48.2 NC_006151.1 + 31405 0.73 0.899582
Target:  5'- -gGCCGGGGcGAGGGGAAgGGGAAGgGg -3'
miRNA:   3'- aaUGGCUCU-CUCCUCUUaUUCUUCgU- -5'
29513 3' -48.2 NC_006151.1 + 121545 0.73 0.906375
Target:  5'- aUGCUGuGAGGGGAGGAggagGGGAAGgGg -3'
miRNA:   3'- aAUGGCuCUCUCCUCUUa---UUCUUCgU- -5'
29513 3' -48.2 NC_006151.1 + 11798 0.73 0.912895
Target:  5'- -gGgCGAGAGGGGcgggguGGggUGGGggGCGg -3'
miRNA:   3'- aaUgGCUCUCUCC------UCuuAUUCuuCGU- -5'
29513 3' -48.2 NC_006151.1 + 32128 0.73 0.919139
Target:  5'- -gACgGGGGGAGaGAGAGcGAGggGCGc -3'
miRNA:   3'- aaUGgCUCUCUC-CUCUUaUUCuuCGU- -5'
29513 3' -48.2 NC_006151.1 + 32581 0.72 0.930794
Target:  5'- -gGCCGGGcGGAGGGGGAagcgggaagGGGAAGCGc -3'
miRNA:   3'- aaUGGCUC-UCUCCUCUUa--------UUCUUCGU- -5'
29513 3' -48.2 NC_006151.1 + 22734 0.72 0.930794
Target:  5'- -gACCGAGAGcuGGAGGccgccgAGGGAGCGg -3'
miRNA:   3'- aaUGGCUCUCu-CCUCUua----UUCUUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.