miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29513 3' -48.2 NC_006151.1 + 835 0.68 0.994313
Target:  5'- -gGCUGGGAGuGGGGAcgGaagacGGAAGCc -3'
miRNA:   3'- aaUGGCUCUCuCCUCUuaU-----UCUUCGu -5'
29513 3' -48.2 NC_006151.1 + 1642 0.71 0.959147
Target:  5'- -gACCGcGGGAGGAGGAgAAGggGa- -3'
miRNA:   3'- aaUGGCuCUCUCCUCUUaUUCuuCgu -5'
29513 3' -48.2 NC_006151.1 + 1759 0.7 0.978267
Target:  5'- -gGCCGGGggauccgcgcGGAGGAGAAgGAGAGGa- -3'
miRNA:   3'- aaUGGCUC----------UCUCCUCUUaUUCUUCgu -5'
29513 3' -48.2 NC_006151.1 + 1805 0.68 0.992314
Target:  5'- -gGCCG-GGGAGGcAGGcgccgGGGAGGCAa -3'
miRNA:   3'- aaUGGCuCUCUCC-UCUua---UUCUUCGU- -5'
29513 3' -48.2 NC_006151.1 + 1924 0.7 0.969777
Target:  5'- -gGCCGAGGgcGAGGGGA--GAGAAGaCGg -3'
miRNA:   3'- aaUGGCUCU--CUCCUCUuaUUCUUC-GU- -5'
29513 3' -48.2 NC_006151.1 + 5038 0.71 0.946193
Target:  5'- -gGCCGGGgaggccgcggcGGAGGAGGAggcggAGGAGGCc -3'
miRNA:   3'- aaUGGCUC-----------UCUCCUCUUa----UUCUUCGu -5'
29513 3' -48.2 NC_006151.1 + 5644 0.72 0.93461
Target:  5'- -cGCCGAGAccggcccggcggcgGGGGAGGcugGGGAAGCGg -3'
miRNA:   3'- aaUGGCUCU--------------CUCCUCUua-UUCUUCGU- -5'
29513 3' -48.2 NC_006151.1 + 5811 0.75 0.824215
Target:  5'- cUGCCGAGgggccgggagagccGGAGGAGGAggccgGGGAGGCu -3'
miRNA:   3'- aAUGGCUC--------------UCUCCUCUUa----UUCUUCGu -5'
29513 3' -48.2 NC_006151.1 + 6203 0.7 0.978267
Target:  5'- -gGCCGA-AGAGGAGAuccucgccgGAGGAGCc -3'
miRNA:   3'- aaUGGCUcUCUCCUCUua-------UUCUUCGu -5'
29513 3' -48.2 NC_006151.1 + 6447 0.72 0.941336
Target:  5'- -gGCCGGaGGAGGAGAAgAAGAAGa- -3'
miRNA:   3'- aaUGGCUcUCUCCUCUUaUUCUUCgu -5'
29513 3' -48.2 NC_006151.1 + 9621 0.73 0.892518
Target:  5'- -gGCCGGcggcGAGGGGGGAAgcgggaggGAGAGGCGc -3'
miRNA:   3'- aaUGGCU----CUCUCCUCUUa-------UUCUUCGU- -5'
29513 3' -48.2 NC_006151.1 + 9850 1.07 0.016579
Target:  5'- cUUACCGAGAGAGGAGAAUAAGAAGCAg -3'
miRNA:   3'- -AAUGGCUCUCUCCUCUUAUUCUUCGU- -5'
29513 3' -48.2 NC_006151.1 + 9969 0.68 0.994313
Target:  5'- -gGCgGAG-GAGGAGAAgaagGAGAGGa- -3'
miRNA:   3'- aaUGgCUCuCUCCUCUUa---UUCUUCgu -5'
29513 3' -48.2 NC_006151.1 + 10355 0.71 0.946193
Target:  5'- -gACgCGGGAGGGGAGGggAGGGAGgGg -3'
miRNA:   3'- aaUG-GCUCUCUCCUCUuaUUCUUCgU- -5'
29513 3' -48.2 NC_006151.1 + 10434 0.71 0.96294
Target:  5'- -gGCCGAGgccggcggggagGGAGGAGGAgGAGGAcGCGg -3'
miRNA:   3'- aaUGGCUC------------UCUCCUCUUaUUCUU-CGU- -5'
29513 3' -48.2 NC_006151.1 + 11724 0.7 0.978267
Target:  5'- ---aCGAGAGGGGGGAgcggggGUGAGggGgAg -3'
miRNA:   3'- aaugGCUCUCUCCUCU------UAUUCuuCgU- -5'
29513 3' -48.2 NC_006151.1 + 11798 0.73 0.912895
Target:  5'- -gGgCGAGAGGGGcgggguGGggUGGGggGCGg -3'
miRNA:   3'- aaUgGCUCUCUCC------UCuuAUUCuuCGU- -5'
29513 3' -48.2 NC_006151.1 + 12318 0.66 0.998098
Target:  5'- -gGCCagGAGAGAuggauggauggauugGGGGAAgGAGggGCGg -3'
miRNA:   3'- aaUGG--CUCUCU---------------CCUCUUaUUCuuCGU- -5'
29513 3' -48.2 NC_006151.1 + 15601 0.74 0.885189
Target:  5'- -gGCCGAGGacGAGGAGGAcGAGGAGg- -3'
miRNA:   3'- aaUGGCUCU--CUCCUCUUaUUCUUCgu -5'
29513 3' -48.2 NC_006151.1 + 16135 0.72 0.941336
Target:  5'- gUGgaGGGAGAGGGGAGUGGGAuggGGUg -3'
miRNA:   3'- aAUggCUCUCUCCUCUUAUUCU---UCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.