Results 41 - 60 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29513 | 5' | -64.1 | NC_006151.1 | + | 137086 | 0.68 | 0.470047 |
Target: 5'- cGGCGCcaggCCUUCgCGGUGcuggCCGGGGa -3' miRNA: 3'- -CCGCGaa--GGAGGgGCCGCca--GGCCCU- -5' |
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29513 | 5' | -64.1 | NC_006151.1 | + | 70931 | 0.68 | 0.470047 |
Target: 5'- uGGCGCUgcacgacggcgCCUUCUCGGCGGUgCGcGuGGc -3' miRNA: 3'- -CCGCGAa----------GGAGGGGCCGCCAgGC-C-CU- -5' |
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29513 | 5' | -64.1 | NC_006151.1 | + | 9665 | 0.68 | 0.468287 |
Target: 5'- cGCGCUUCCccuucccgcuUCCCCcuccgcccggccGCGGgugcCCGGGAg -3' miRNA: 3'- cCGCGAAGG----------AGGGGc-----------CGCCa---GGCCCU- -5' |
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29513 | 5' | -64.1 | NC_006151.1 | + | 123009 | 0.68 | 0.461278 |
Target: 5'- cGGCGCgcCC-CCgCCGGCGGacgCCGuGGc -3' miRNA: 3'- -CCGCGaaGGaGG-GGCCGCCa--GGC-CCu -5' |
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29513 | 5' | -64.1 | NC_006151.1 | + | 22796 | 0.68 | 0.461278 |
Target: 5'- cGUGCUgggccgUCUCCCCGGCcGUCaggugcaGGGGg -3' miRNA: 3'- cCGCGAa-----GGAGGGGCCGcCAGg------CCCU- -5' |
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29513 | 5' | -64.1 | NC_006151.1 | + | 141596 | 0.68 | 0.461278 |
Target: 5'- gGGCGagagCCg-CCCGGCGaGgcugCCGGGAu -3' miRNA: 3'- -CCGCgaa-GGagGGGCCGC-Ca---GGCCCU- -5' |
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29513 | 5' | -64.1 | NC_006151.1 | + | 116991 | 0.68 | 0.458663 |
Target: 5'- aGGCGCUggugCCgcagcaccacgcgcUCCCCcGCGGgcCCGGGc -3' miRNA: 3'- -CCGCGAa---GG--------------AGGGGcCGCCa-GGCCCu -5' |
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29513 | 5' | -64.1 | NC_006151.1 | + | 37224 | 0.68 | 0.452595 |
Target: 5'- cGcCGCggCCUCCCCGGCcccGGcCCcGGAg -3' miRNA: 3'- cC-GCGaaGGAGGGGCCG---CCaGGcCCU- -5' |
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29513 | 5' | -64.1 | NC_006151.1 | + | 27236 | 0.68 | 0.452595 |
Target: 5'- cGCGCa-CCUCCUCGG-GGUCgggCGGGGg -3' miRNA: 3'- cCGCGaaGGAGGGGCCgCCAG---GCCCU- -5' |
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29513 | 5' | -64.1 | NC_006151.1 | + | 10644 | 0.68 | 0.452595 |
Target: 5'- cGGCGCggcaUCCccgCCCaGGCGG-CgGGGGa -3' miRNA: 3'- -CCGCGa---AGGa--GGGgCCGCCaGgCCCU- -5' |
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29513 | 5' | -64.1 | NC_006151.1 | + | 31018 | 0.68 | 0.444002 |
Target: 5'- gGGuCGCcgCCgcggCCCUcGCGGcCCGGGAg -3' miRNA: 3'- -CC-GCGaaGGa---GGGGcCGCCaGGCCCU- -5' |
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29513 | 5' | -64.1 | NC_006151.1 | + | 90607 | 0.68 | 0.444002 |
Target: 5'- aGGCGUggCCcccuUCCCCcgaGGCGGcCCGcGGGc -3' miRNA: 3'- -CCGCGaaGG----AGGGG---CCGCCaGGC-CCU- -5' |
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29513 | 5' | -64.1 | NC_006151.1 | + | 691 | 0.68 | 0.427095 |
Target: 5'- cGGCGCgccgagCCUgCCCCuuccgucgcaccGGgGGUCCGcGGGc -3' miRNA: 3'- -CCGCGaa----GGA-GGGG------------CCgCCAGGC-CCU- -5' |
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29513 | 5' | -64.1 | NC_006151.1 | + | 142572 | 0.68 | 0.418787 |
Target: 5'- aGGCGCgcucUCCUCUCCGGUcccGG-CgGGGc -3' miRNA: 3'- -CCGCGa---AGGAGGGGCCG---CCaGgCCCu -5' |
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29513 | 5' | -64.1 | NC_006151.1 | + | 49706 | 0.68 | 0.418787 |
Target: 5'- aGCGCacccCCUCCCCGGgagggGGUgcUCGGGAg -3' miRNA: 3'- cCGCGaa--GGAGGGGCCg----CCA--GGCCCU- -5' |
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29513 | 5' | -64.1 | NC_006151.1 | + | 100103 | 0.69 | 0.410577 |
Target: 5'- cGGCGCcgcCCUCgCUGGCGGccagcgccuuccUCgGGGAc -3' miRNA: 3'- -CCGCGaa-GGAGgGGCCGCC------------AGgCCCU- -5' |
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29513 | 5' | -64.1 | NC_006151.1 | + | 5641 | 0.69 | 0.410577 |
Target: 5'- gGGCGCcgagaCCggCCCGGCGG-CgGGGGa -3' miRNA: 3'- -CCGCGaa---GGagGGGCCGCCaGgCCCU- -5' |
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29513 | 5' | -64.1 | NC_006151.1 | + | 141436 | 0.69 | 0.409761 |
Target: 5'- cGGCGCgaacgaCgUCCCCguaggagGGCGGUCUGGa- -3' miRNA: 3'- -CCGCGaa----GgAGGGG-------CCGCCAGGCCcu -5' |
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29513 | 5' | -64.1 | NC_006151.1 | + | 142272 | 0.69 | 0.402468 |
Target: 5'- aGCGCc-CCgUCCCGGCGGccagaccggCCGGGAc -3' miRNA: 3'- cCGCGaaGGaGGGGCCGCCa--------GGCCCU- -5' |
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29513 | 5' | -64.1 | NC_006151.1 | + | 59829 | 0.69 | 0.386558 |
Target: 5'- cGCGaugucggCCgCCaCCGGcCGGUCCGGGGg -3' miRNA: 3'- cCGCgaa----GGaGG-GGCC-GCCAGGCCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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