miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29513 5' -64.1 NC_006151.1 + 34014 0.66 0.541077
Target:  5'- cGGCGCgccggcccggcCCUCCCCGcCGGgaaGGGGa -3'
miRNA:   3'- -CCGCGaa---------GGAGGGGCcGCCaggCCCU- -5'
29513 5' -64.1 NC_006151.1 + 96632 0.66 0.533605
Target:  5'- gGGCGCgcagcgCCUCgagCUCGGCGGcgagggcCCGGGc -3'
miRNA:   3'- -CCGCGaa----GGAG---GGGCCGCCa------GGCCCu -5'
29513 5' -64.1 NC_006151.1 + 37392 0.67 0.524319
Target:  5'- cGGcCGCgUCCgCUaCGGCGGcgCCGGGGa -3'
miRNA:   3'- -CC-GCGaAGGaGGgGCCGCCa-GGCCCU- -5'
29513 5' -64.1 NC_006151.1 + 134425 0.67 0.524319
Target:  5'- uGGUGCUgCC-CCCCGGgGGcgCCGaGAc -3'
miRNA:   3'- -CCGCGAaGGaGGGGCCgCCa-GGCcCU- -5'
29513 5' -64.1 NC_006151.1 + 81722 0.67 0.524319
Target:  5'- gGGCGCcgggUCCUCgCCGaaGGUCCaGGc -3'
miRNA:   3'- -CCGCGa---AGGAGgGGCcgCCAGGcCCu -5'
29513 5' -64.1 NC_006151.1 + 5392 0.67 0.523394
Target:  5'- gGGCGCcccgCCgUCCCCGGCGaggccgaGUCCGu-- -3'
miRNA:   3'- -CCGCGaa--GG-AGGGGCCGC-------CAGGCccu -5'
29513 5' -64.1 NC_006151.1 + 50428 0.67 0.515095
Target:  5'- aGGCGCc-CCUgcgCgCCGGCGGcCUGGGc -3'
miRNA:   3'- -CCGCGaaGGA---GgGGCCGCCaGGCCCu -5'
29513 5' -64.1 NC_006151.1 + 117793 0.67 0.515095
Target:  5'- gGGCGCca-Cg-CCCGGCGGggCGGGGc -3'
miRNA:   3'- -CCGCGaagGagGGGCCGCCagGCCCU- -5'
29513 5' -64.1 NC_006151.1 + 106206 0.67 0.51234
Target:  5'- cGGUGCggcucgcCCUCCCCGaccugaugguggccGCGGUggCCGGcGAg -3'
miRNA:   3'- -CCGCGaa-----GGAGGGGC--------------CGCCA--GGCC-CU- -5'
29513 5' -64.1 NC_006151.1 + 26373 0.67 0.505937
Target:  5'- gGGCGCgcgUC-CCCCGGCGGg-CGGc- -3'
miRNA:   3'- -CCGCGaa-GGaGGGGCCGCCagGCCcu -5'
29513 5' -64.1 NC_006151.1 + 64468 0.67 0.505937
Target:  5'- cGGCGCgcgCCgCCgCGGCGGggacgcCCGcGGGc -3'
miRNA:   3'- -CCGCGaa-GGaGGgGCCGCCa-----GGC-CCU- -5'
29513 5' -64.1 NC_006151.1 + 132561 0.67 0.505937
Target:  5'- gGGCaGC-UCCUCCUCcaCGG-CCGGGAc -3'
miRNA:   3'- -CCG-CGaAGGAGGGGccGCCaGGCCCU- -5'
29513 5' -64.1 NC_006151.1 + 20466 0.67 0.505937
Target:  5'- uGGCGCcggUCC-CCCgGGgGGgCgCGGGGg -3'
miRNA:   3'- -CCGCGa--AGGaGGGgCCgCCaG-GCCCU- -5'
29513 5' -64.1 NC_006151.1 + 36407 0.67 0.497755
Target:  5'- gGGCGCUcgucccccuccgcagCCUCCCCGGCcuccuccUCCGGc- -3'
miRNA:   3'- -CCGCGAa--------------GGAGGGGCCGcc-----AGGCCcu -5'
29513 5' -64.1 NC_006151.1 + 34519 0.67 0.487837
Target:  5'- cGGCGUcg-CUUCCCGGUucgGGUCCGGu- -3'
miRNA:   3'- -CCGCGaagGAGGGGCCG---CCAGGCCcu -5'
29513 5' -64.1 NC_006151.1 + 34625 0.67 0.487837
Target:  5'- aGGCGCggguggggCgaCCgCGGgGGUCgCGGGAg -3'
miRNA:   3'- -CCGCGaa------GgaGGgGCCgCCAG-GCCCU- -5'
29513 5' -64.1 NC_006151.1 + 48137 0.67 0.487837
Target:  5'- cGGCGCUggggguUCCUggcaCCGGCG-UCgCGGGAa -3'
miRNA:   3'- -CCGCGA------AGGAgg--GGCCGCcAG-GCCCU- -5'
29513 5' -64.1 NC_006151.1 + 27332 0.67 0.478902
Target:  5'- gGGgGCUg-CUCCCCGGgacCGGggucgugggCCGGGGc -3'
miRNA:   3'- -CCgCGAagGAGGGGCC---GCCa--------GGCCCU- -5'
29513 5' -64.1 NC_006151.1 + 49069 0.67 0.474464
Target:  5'- cGGCGCggggugCCgauccccccgagCCUggccaacaucuucgCGGCGGUCCGGGc -3'
miRNA:   3'- -CCGCGaa----GGa-----------GGG--------------GCCGCCAGGCCCu -5'
29513 5' -64.1 NC_006151.1 + 137086 0.68 0.470047
Target:  5'- cGGCGCcaggCCUUCgCGGUGcuggCCGGGGa -3'
miRNA:   3'- -CCGCGaa--GGAGGgGCCGCca--GGCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.