miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29513 5' -64.1 NC_006151.1 + 130963 0.7 0.356008
Target:  5'- gGGCGCgggggCCgguaCCCCGGCcGcCCGGGc -3'
miRNA:   3'- -CCGCGaa---GGa---GGGGCCGcCaGGCCCu -5'
29513 5' -64.1 NC_006151.1 + 130688 0.7 0.356008
Target:  5'- cGGCGCaggaugUCCgggggCCCgacggGGCGGcCCGGGGg -3'
miRNA:   3'- -CCGCGa-----AGGa----GGGg----CCGCCaGGCCCU- -5'
29513 5' -64.1 NC_006151.1 + 8222 0.7 0.356008
Target:  5'- gGGCcggGUccCCUUCCCGGCGGggagggCCGGGc -3'
miRNA:   3'- -CCG---CGaaGGAGGGGCCGCCa-----GGCCCu -5'
29513 5' -64.1 NC_006151.1 + 10571 0.7 0.356008
Target:  5'- uGGCGCggCCggCUCGGCGGcCCGGc- -3'
miRNA:   3'- -CCGCGaaGGagGGGCCGCCaGGCCcu -5'
29513 5' -64.1 NC_006151.1 + 83338 0.7 0.363484
Target:  5'- aGGCGCgcgUCCacgugcUCCCCGGCGcGcgCgCGGGc -3'
miRNA:   3'- -CCGCGa--AGG------AGGGGCCGC-Ca-G-GCCCu -5'
29513 5' -64.1 NC_006151.1 + 70107 0.69 0.375671
Target:  5'- gGGCGCgagcgggUCCacgCCCgcgcgccgcaggaGGgGGUCCGGGAc -3'
miRNA:   3'- -CCGCGa------AGGa--GGGg------------CCgCCAGGCCCU- -5'
29513 5' -64.1 NC_006151.1 + 40086 0.69 0.37876
Target:  5'- gGGCGCcggggCCggCCCCGGCGaggaCGGGGa -3'
miRNA:   3'- -CCGCGaa---GGa-GGGGCCGCcag-GCCCU- -5'
29513 5' -64.1 NC_006151.1 + 59829 0.69 0.386558
Target:  5'- cGCGaugucggCCgCCaCCGGcCGGUCCGGGGg -3'
miRNA:   3'- cCGCgaa----GGaGG-GGCC-GCCAGGCCCU- -5'
29513 5' -64.1 NC_006151.1 + 142272 0.69 0.402468
Target:  5'- aGCGCc-CCgUCCCGGCGGccagaccggCCGGGAc -3'
miRNA:   3'- cCGCGaaGGaGGGGCCGCCa--------GGCCCU- -5'
29513 5' -64.1 NC_006151.1 + 141436 0.69 0.409761
Target:  5'- cGGCGCgaacgaCgUCCCCguaggagGGCGGUCUGGa- -3'
miRNA:   3'- -CCGCGaa----GgAGGGG-------CCGCCAGGCCcu -5'
29513 5' -64.1 NC_006151.1 + 5641 0.69 0.410577
Target:  5'- gGGCGCcgagaCCggCCCGGCGG-CgGGGGa -3'
miRNA:   3'- -CCGCGaa---GGagGGGCCGCCaGgCCCU- -5'
29513 5' -64.1 NC_006151.1 + 100103 0.69 0.410577
Target:  5'- cGGCGCcgcCCUCgCUGGCGGccagcgccuuccUCgGGGAc -3'
miRNA:   3'- -CCGCGaa-GGAGgGGCCGCC------------AGgCCCU- -5'
29513 5' -64.1 NC_006151.1 + 49706 0.68 0.418787
Target:  5'- aGCGCacccCCUCCCCGGgagggGGUgcUCGGGAg -3'
miRNA:   3'- cCGCGaa--GGAGGGGCCg----CCA--GGCCCU- -5'
29513 5' -64.1 NC_006151.1 + 142572 0.68 0.418787
Target:  5'- aGGCGCgcucUCCUCUCCGGUcccGG-CgGGGc -3'
miRNA:   3'- -CCGCGa---AGGAGGGGCCG---CCaGgCCCu -5'
29513 5' -64.1 NC_006151.1 + 691 0.68 0.427095
Target:  5'- cGGCGCgccgagCCUgCCCCuuccgucgcaccGGgGGUCCGcGGGc -3'
miRNA:   3'- -CCGCGaa----GGA-GGGG------------CCgCCAGGC-CCU- -5'
29513 5' -64.1 NC_006151.1 + 90607 0.68 0.444002
Target:  5'- aGGCGUggCCcccuUCCCCcgaGGCGGcCCGcGGGc -3'
miRNA:   3'- -CCGCGaaGG----AGGGG---CCGCCaGGC-CCU- -5'
29513 5' -64.1 NC_006151.1 + 31018 0.68 0.444002
Target:  5'- gGGuCGCcgCCgcggCCCUcGCGGcCCGGGAg -3'
miRNA:   3'- -CC-GCGaaGGa---GGGGcCGCCaGGCCCU- -5'
29513 5' -64.1 NC_006151.1 + 10644 0.68 0.452595
Target:  5'- cGGCGCggcaUCCccgCCCaGGCGG-CgGGGGa -3'
miRNA:   3'- -CCGCGa---AGGa--GGGgCCGCCaGgCCCU- -5'
29513 5' -64.1 NC_006151.1 + 37224 0.68 0.452595
Target:  5'- cGcCGCggCCUCCCCGGCcccGGcCCcGGAg -3'
miRNA:   3'- cC-GCGaaGGAGGGGCCG---CCaGGcCCU- -5'
29513 5' -64.1 NC_006151.1 + 27236 0.68 0.452595
Target:  5'- cGCGCa-CCUCCUCGG-GGUCgggCGGGGg -3'
miRNA:   3'- cCGCGaaGGAGGGGCCgCCAG---GCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.