miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29513 5' -64.1 NC_006151.1 + 20466 0.67 0.505937
Target:  5'- uGGCGCcggUCC-CCCgGGgGGgCgCGGGGg -3'
miRNA:   3'- -CCGCGa--AGGaGGGgCCgCCaG-GCCCU- -5'
29513 5' -64.1 NC_006151.1 + 20753 0.7 0.341383
Target:  5'- cGGCGCg-CCUCCaccgCGGCGGacgcgcgCCGGGc -3'
miRNA:   3'- -CCGCGaaGGAGGg---GCCGCCa------GGCCCu -5'
29513 5' -64.1 NC_006151.1 + 22796 0.68 0.461278
Target:  5'- cGUGCUgggccgUCUCCCCGGCcGUCaggugcaGGGGg -3'
miRNA:   3'- cCGCGAa-----GGAGGGGCCGcCAGg------CCCU- -5'
29513 5' -64.1 NC_006151.1 + 26373 0.67 0.505937
Target:  5'- gGGCGCgcgUC-CCCCGGCGGg-CGGc- -3'
miRNA:   3'- -CCGCGaa-GGaGGGGCCGCCagGCCcu -5'
29513 5' -64.1 NC_006151.1 + 27236 0.68 0.452595
Target:  5'- cGCGCa-CCUCCUCGG-GGUCgggCGGGGg -3'
miRNA:   3'- cCGCGaaGGAGGGGCCgCCAG---GCCCU- -5'
29513 5' -64.1 NC_006151.1 + 27332 0.67 0.478902
Target:  5'- gGGgGCUg-CUCCCCGGgacCGGggucgugggCCGGGGc -3'
miRNA:   3'- -CCgCGAagGAGGGGCC---GCCa--------GGCCCU- -5'
29513 5' -64.1 NC_006151.1 + 28591 0.66 0.552347
Target:  5'- cGGCGCg---UCCCCggaGGCGGgugCCGcGGGg -3'
miRNA:   3'- -CCGCGaaggAGGGG---CCGCCa--GGC-CCU- -5'
29513 5' -64.1 NC_006151.1 + 28872 0.66 0.552347
Target:  5'- cGGCGCg---UCCCCggaGGCGGgugCCGcGGGg -3'
miRNA:   3'- -CCGCGaaggAGGGG---CCGCCa--GGC-CCU- -5'
29513 5' -64.1 NC_006151.1 + 30666 0.73 0.21313
Target:  5'- cGCGCUgguuccgggaagCCUcCCCCGGCGGg-CGGGGg -3'
miRNA:   3'- cCGCGAa-----------GGA-GGGGCCGCCagGCCCU- -5'
29513 5' -64.1 NC_006151.1 + 31018 0.68 0.444002
Target:  5'- gGGuCGCcgCCgcggCCCUcGCGGcCCGGGAg -3'
miRNA:   3'- -CC-GCGaaGGa---GGGGcCGCCaGGCCCU- -5'
29513 5' -64.1 NC_006151.1 + 32360 0.72 0.25131
Target:  5'- cGGgGCUUUCUUCCCGGaccgCCGGGGa -3'
miRNA:   3'- -CCgCGAAGGAGGGGCCgccaGGCCCU- -5'
29513 5' -64.1 NC_006151.1 + 33207 0.74 0.204874
Target:  5'- cGGCGCccCCggagcacgcggggcgCCCCGGCGGgcgggagggggUCCGGGGg -3'
miRNA:   3'- -CCGCGaaGGa--------------GGGGCCGCC-----------AGGCCCU- -5'
29513 5' -64.1 NC_006151.1 + 34014 0.66 0.541077
Target:  5'- cGGCGCgccggcccggcCCUCCCCGcCGGgaaGGGGa -3'
miRNA:   3'- -CCGCGaa---------GGAGGGGCcGCCaggCCCU- -5'
29513 5' -64.1 NC_006151.1 + 34456 0.7 0.333526
Target:  5'- cGGCucCUUCCUUCCgGGUccgggcgGGUCCGGGc -3'
miRNA:   3'- -CCGc-GAAGGAGGGgCCG-------CCAGGCCCu -5'
29513 5' -64.1 NC_006151.1 + 34519 0.67 0.487837
Target:  5'- cGGCGUcg-CUUCCCGGUucgGGUCCGGu- -3'
miRNA:   3'- -CCGCGaagGAGGGGCCG---CCAGGCCcu -5'
29513 5' -64.1 NC_006151.1 + 34625 0.67 0.487837
Target:  5'- aGGCGCggguggggCgaCCgCGGgGGUCgCGGGAg -3'
miRNA:   3'- -CCGCGaa------GgaGGgGCCgCCAG-GCCCU- -5'
29513 5' -64.1 NC_006151.1 + 36407 0.67 0.497755
Target:  5'- gGGCGCUcgucccccuccgcagCCUCCCCGGCcuccuccUCCGGc- -3'
miRNA:   3'- -CCGCGAa--------------GGAGGGGCCGcc-----AGGCCcu -5'
29513 5' -64.1 NC_006151.1 + 37224 0.68 0.452595
Target:  5'- cGcCGCggCCUCCCCGGCcccGGcCCcGGAg -3'
miRNA:   3'- cC-GCGaaGGAGGGGCCG---CCaGGcCCU- -5'
29513 5' -64.1 NC_006151.1 + 37392 0.67 0.524319
Target:  5'- cGGcCGCgUCCgCUaCGGCGGcgCCGGGGa -3'
miRNA:   3'- -CC-GCGaAGGaGGgGCCGCCa-GGCCCU- -5'
29513 5' -64.1 NC_006151.1 + 38402 0.75 0.1775
Target:  5'- gGGCGCccccuccggCCUCCCCGGC--UCCGGGc -3'
miRNA:   3'- -CCGCGaa-------GGAGGGGCCGccAGGCCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.