miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29513 5' -64.1 NC_006151.1 + 691 0.68 0.427095
Target:  5'- cGGCGCgccgagCCUgCCCCuuccgucgcaccGGgGGUCCGcGGGc -3'
miRNA:   3'- -CCGCGaa----GGA-GGGG------------CCgCCAGGC-CCU- -5'
29513 5' -64.1 NC_006151.1 + 3703 0.71 0.28102
Target:  5'- cGGCGCUUCUUCUugcgccgcuCgGGCgcugGGUCCGGGc -3'
miRNA:   3'- -CCGCGAAGGAGG---------GgCCG----CCAGGCCCu -5'
29513 5' -64.1 NC_006151.1 + 3872 0.66 0.561793
Target:  5'- gGGCGCccgCCgCCgCCGGCGccggcgCUGGGAc -3'
miRNA:   3'- -CCGCGaa-GGaGG-GGCCGCca----GGCCCU- -5'
29513 5' -64.1 NC_006151.1 + 4363 0.7 0.323027
Target:  5'- gGGCGCagagggccucgacggUcgCCUCCCCGGCgcgggGGUCCGcGGc -3'
miRNA:   3'- -CCGCG---------------Aa-GGAGGGGCCG-----CCAGGC-CCu -5'
29513 5' -64.1 NC_006151.1 + 4997 0.77 0.126658
Target:  5'- cGGCGCUUCCUgCgCGGgGG-CCGGGc -3'
miRNA:   3'- -CCGCGAAGGAgGgGCCgCCaGGCCCu -5'
29513 5' -64.1 NC_006151.1 + 5349 0.71 0.28102
Target:  5'- gGGCGC--CCUCUCCGGCGcGgcgCCGGcGGg -3'
miRNA:   3'- -CCGCGaaGGAGGGGCCGC-Ca--GGCC-CU- -5'
29513 5' -64.1 NC_006151.1 + 5392 0.67 0.523394
Target:  5'- gGGCGCcccgCCgUCCCCGGCGaggccgaGUCCGu-- -3'
miRNA:   3'- -CCGCGaa--GG-AGGGGCCGC-------CAGGCccu -5'
29513 5' -64.1 NC_006151.1 + 5641 0.69 0.410577
Target:  5'- gGGCGCcgagaCCggCCCGGCGG-CgGGGGa -3'
miRNA:   3'- -CCGCGaa---GGagGGGCCGCCaGgCCCU- -5'
29513 5' -64.1 NC_006151.1 + 8222 0.7 0.356008
Target:  5'- gGGCcggGUccCCUUCCCGGCGGggagggCCGGGc -3'
miRNA:   3'- -CCG---CGaaGGAGGGGCCGCCa-----GGCCCu -5'
29513 5' -64.1 NC_006151.1 + 8301 0.66 0.552347
Target:  5'- gGGCGCcgcgUCCcgCCCCGaGCcc-CCGGGGc -3'
miRNA:   3'- -CCGCGa---AGGa-GGGGC-CGccaGGCCCU- -5'
29513 5' -64.1 NC_006151.1 + 8365 0.76 0.132995
Target:  5'- aGGCGCgaggCCcccgCCCCcggGGgGGUCCGGGAu -3'
miRNA:   3'- -CCGCGaa--GGa---GGGG---CCgCCAGGCCCU- -5'
29513 5' -64.1 NC_006151.1 + 9665 0.68 0.468287
Target:  5'- cGCGCUUCCccuucccgcuUCCCCcuccgcccggccGCGGgugcCCGGGAg -3'
miRNA:   3'- cCGCGAAGG----------AGGGGc-----------CGCCa---GGCCCU- -5'
29513 5' -64.1 NC_006151.1 + 9884 1.09 0.000554
Target:  5'- gGGCGCUUCCUCCCCGGCGGUCCGGGAa -3'
miRNA:   3'- -CCGCGAAGGAGGGGCCGCCAGGCCCU- -5'
29513 5' -64.1 NC_006151.1 + 10571 0.7 0.356008
Target:  5'- uGGCGCggCCggCUCGGCGGcCCGGc- -3'
miRNA:   3'- -CCGCGaaGGagGGGCCGCCaGGCCcu -5'
29513 5' -64.1 NC_006151.1 + 10644 0.68 0.452595
Target:  5'- cGGCGCggcaUCCccgCCCaGGCGG-CgGGGGa -3'
miRNA:   3'- -CCGCGa---AGGa--GGGgCCGCCaGgCCCU- -5'
29513 5' -64.1 NC_006151.1 + 11170 0.66 0.568432
Target:  5'- cGGCGCcuagacaccgUUucugcagacagagcCCUCUCUaauGGCGcGUCCGGGAa -3'
miRNA:   3'- -CCGCG----------AA--------------GGAGGGG---CCGC-CAGGCCCU- -5'
29513 5' -64.1 NC_006151.1 + 13067 0.66 0.552347
Target:  5'- cGCGCcccUUUUUCCUCGagaGCGGgcgUCCGGGAa -3'
miRNA:   3'- cCGCG---AAGGAGGGGC---CGCC---AGGCCCU- -5'
29513 5' -64.1 NC_006151.1 + 13134 0.66 0.552347
Target:  5'- cGCGaCUUCCcggCCCgCGauGCGGUCCcGGAa -3'
miRNA:   3'- cCGC-GAAGGa--GGG-GC--CGCCAGGcCCU- -5'
29513 5' -64.1 NC_006151.1 + 15336 0.66 0.552347
Target:  5'- cGCGCgUCCucUCCCCGcCGGUCaucgaGGGc -3'
miRNA:   3'- cCGCGaAGG--AGGGGCcGCCAGg----CCCu -5'
29513 5' -64.1 NC_006151.1 + 17476 0.66 0.571283
Target:  5'- cGGCGUgUCCUCgUCGGCGGcgcgCCGc-- -3'
miRNA:   3'- -CCGCGaAGGAGgGGCCGCCa---GGCccu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.