miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29513 5' -64.1 NC_006151.1 + 142572 0.68 0.418787
Target:  5'- aGGCGCgcucUCCUCUCCGGUcccGG-CgGGGc -3'
miRNA:   3'- -CCGCGa---AGGAGGGGCCG---CCaGgCCCu -5'
29513 5' -64.1 NC_006151.1 + 142272 0.69 0.402468
Target:  5'- aGCGCc-CCgUCCCGGCGGccagaccggCCGGGAc -3'
miRNA:   3'- cCGCGaaGGaGGGGCCGCCa--------GGCCCU- -5'
29513 5' -64.1 NC_006151.1 + 141756 0.66 0.568432
Target:  5'- gGGCGCgcg--CCCCGGUGGcgucgccgguucugUCCcGGGGa -3'
miRNA:   3'- -CCGCGaaggaGGGGCCGCC--------------AGG-CCCU- -5'
29513 5' -64.1 NC_006151.1 + 141596 0.68 0.461278
Target:  5'- gGGCGagagCCg-CCCGGCGaGgcugCCGGGAu -3'
miRNA:   3'- -CCGCgaa-GGagGGGCCGC-Ca---GGCCCU- -5'
29513 5' -64.1 NC_006151.1 + 141436 0.69 0.409761
Target:  5'- cGGCGCgaacgaCgUCCCCguaggagGGCGGUCUGGa- -3'
miRNA:   3'- -CCGCGaa----GgAGGGG-------CCGCCAGGCCcu -5'
29513 5' -64.1 NC_006151.1 + 138606 0.68 0.470047
Target:  5'- cGGCGCUgCCg-CUCGGCGaGgacgccgCCGGGGg -3'
miRNA:   3'- -CCGCGAaGGagGGGCCGC-Ca------GGCCCU- -5'
29513 5' -64.1 NC_006151.1 + 137086 0.68 0.470047
Target:  5'- cGGCGCcaggCCUUCgCGGUGcuggCCGGGGa -3'
miRNA:   3'- -CCGCGaa--GGAGGgGCCGCca--GGCCCU- -5'
29513 5' -64.1 NC_006151.1 + 134425 0.67 0.524319
Target:  5'- uGGUGCUgCC-CCCCGGgGGcgCCGaGAc -3'
miRNA:   3'- -CCGCGAaGGaGGGGCCgCCa-GGCcCU- -5'
29513 5' -64.1 NC_006151.1 + 132561 0.67 0.505937
Target:  5'- gGGCaGC-UCCUCCUCcaCGG-CCGGGAc -3'
miRNA:   3'- -CCG-CGaAGGAGGGGccGCCaGGCCCU- -5'
29513 5' -64.1 NC_006151.1 + 130963 0.7 0.356008
Target:  5'- gGGCGCgggggCCgguaCCCCGGCcGcCCGGGc -3'
miRNA:   3'- -CCGCGaa---GGa---GGGGCCGcCaGGCCCu -5'
29513 5' -64.1 NC_006151.1 + 130688 0.7 0.356008
Target:  5'- cGGCGCaggaugUCCgggggCCCgacggGGCGGcCCGGGGg -3'
miRNA:   3'- -CCGCGa-----AGGa----GGGg----CCGCCaGGCCCU- -5'
29513 5' -64.1 NC_006151.1 + 125242 0.66 0.565584
Target:  5'- cGGCGCUcccCCggCCCGGCGGggacgcccgagccgCCGGc- -3'
miRNA:   3'- -CCGCGAa--GGagGGGCCGCCa-------------GGCCcu -5'
29513 5' -64.1 NC_006151.1 + 123009 0.68 0.461278
Target:  5'- cGGCGCgcCC-CCgCCGGCGGacgCCGuGGc -3'
miRNA:   3'- -CCGCGaaGGaGG-GGCCGCCa--GGC-CCu -5'
29513 5' -64.1 NC_006151.1 + 117793 0.67 0.515095
Target:  5'- gGGCGCca-Cg-CCCGGCGGggCGGGGc -3'
miRNA:   3'- -CCGCGaagGagGGGCCGCCagGCCCU- -5'
29513 5' -64.1 NC_006151.1 + 116991 0.68 0.458663
Target:  5'- aGGCGCUggugCCgcagcaccacgcgcUCCCCcGCGGgcCCGGGc -3'
miRNA:   3'- -CCGCGAa---GG--------------AGGGGcCGCCa-GGCCCu -5'
29513 5' -64.1 NC_006151.1 + 114914 0.66 0.5599
Target:  5'- gGGCGCacgg-CCCCGGCGucgcgcucggccUCCGGGGu -3'
miRNA:   3'- -CCGCGaaggaGGGGCCGCc-----------AGGCCCU- -5'
29513 5' -64.1 NC_006151.1 + 114701 0.66 0.58081
Target:  5'- gGGCGCg---UCCCCGGgGGcgguuUCCGGa- -3'
miRNA:   3'- -CCGCGaaggAGGGGCCgCC-----AGGCCcu -5'
29513 5' -64.1 NC_006151.1 + 112017 0.7 0.334235
Target:  5'- cGGCgGCgaUUUUCCCGGCGGgagCUGGGGc -3'
miRNA:   3'- -CCG-CGaaGGAGGGGCCGCCa--GGCCCU- -5'
29513 5' -64.1 NC_006151.1 + 111428 0.66 0.58081
Target:  5'- aGCGCUgCCgcaUCUCgGcGCGGUCCaGGAg -3'
miRNA:   3'- cCGCGAaGG---AGGGgC-CGCCAGGcCCU- -5'
29513 5' -64.1 NC_006151.1 + 106206 0.67 0.51234
Target:  5'- cGGUGCggcucgcCCUCCCCGaccugaugguggccGCGGUggCCGGcGAg -3'
miRNA:   3'- -CCGCGaa-----GGAGGGGC--------------CGCCA--GGCC-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.