miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29513 5' -64.1 NC_006151.1 + 9884 1.09 0.000554
Target:  5'- gGGCGCUUCCUCCCCGGCGGUCCGGGAa -3'
miRNA:   3'- -CCGCGAAGGAGGGGCCGCCAGGCCCU- -5'
29513 5' -64.1 NC_006151.1 + 79306 0.78 0.100964
Target:  5'- cGCGCcccgggacgggCCUCCCCGGCGGgacggCCGGGu -3'
miRNA:   3'- cCGCGaa---------GGAGGGGCCGCCa----GGCCCu -5'
29513 5' -64.1 NC_006151.1 + 40442 0.78 0.104013
Target:  5'- cGGCGCUUgCCUCCCCGGCgccugccuccccGGcCCGGuGGc -3'
miRNA:   3'- -CCGCGAA-GGAGGGGCCG------------CCaGGCC-CU- -5'
29513 5' -64.1 NC_006151.1 + 4997 0.77 0.126658
Target:  5'- cGGCGCUUCCUgCgCGGgGG-CCGGGc -3'
miRNA:   3'- -CCGCGAAGGAgGgGCCgCCaGGCCCu -5'
29513 5' -64.1 NC_006151.1 + 8365 0.76 0.132995
Target:  5'- aGGCGCgaggCCcccgCCCCcggGGgGGUCCGGGAu -3'
miRNA:   3'- -CCGCGaa--GGa---GGGG---CCgCCAGGCCCU- -5'
29513 5' -64.1 NC_006151.1 + 38402 0.75 0.1775
Target:  5'- gGGCGCccccuccggCCUCCCCGGC--UCCGGGc -3'
miRNA:   3'- -CCGCGaa-------GGAGGGGCCGccAGGCCCu -5'
29513 5' -64.1 NC_006151.1 + 92659 0.74 0.186097
Target:  5'- aGGCGCUcgcCCUgCUgCCGGCGG-CCGGGGa -3'
miRNA:   3'- -CCGCGAa--GGA-GG-GGCCGCCaGGCCCU- -5'
29513 5' -64.1 NC_006151.1 + 96014 0.74 0.195059
Target:  5'- uGGCGCgcaccgCCUCCUCGGUGGUgCGcGGc -3'
miRNA:   3'- -CCGCGaa----GGAGGGGCCGCCAgGC-CCu -5'
29513 5' -64.1 NC_006151.1 + 33207 0.74 0.204874
Target:  5'- cGGCGCccCCggagcacgcggggcgCCCCGGCGGgcgggagggggUCCGGGGg -3'
miRNA:   3'- -CCGCGaaGGa--------------GGGGCCGCC-----------AGGCCCU- -5'
29513 5' -64.1 NC_006151.1 + 30666 0.73 0.21313
Target:  5'- cGCGCUgguuccgggaagCCUcCCCCGGCGGg-CGGGGg -3'
miRNA:   3'- cCGCGAa-----------GGA-GGGGCCGCCagGCCCU- -5'
29513 5' -64.1 NC_006151.1 + 50713 0.73 0.219128
Target:  5'- cGGCGaCggCCgCCCCGGCGGUCCa--- -3'
miRNA:   3'- -CCGC-GaaGGaGGGGCCGCCAGGcccu -5'
29513 5' -64.1 NC_006151.1 + 32360 0.72 0.25131
Target:  5'- cGGgGCUUUCUUCCCGGaccgCCGGGGa -3'
miRNA:   3'- -CCgCGAAGGAGGGGCCgccaGGCCCU- -5'
29513 5' -64.1 NC_006151.1 + 5349 0.71 0.28102
Target:  5'- gGGCGC--CCUCUCCGGCGcGgcgCCGGcGGg -3'
miRNA:   3'- -CCGCGaaGGAGGGGCCGC-Ca--GGCC-CU- -5'
29513 5' -64.1 NC_006151.1 + 3703 0.71 0.28102
Target:  5'- cGGCGCUUCUUCUugcgccgcuCgGGCgcugGGUCCGGGc -3'
miRNA:   3'- -CCGCGAAGGAGG---------GgCCG----CCAGGCCCu -5'
29513 5' -64.1 NC_006151.1 + 66304 0.71 0.293663
Target:  5'- cGGCGCU-----CCCGGCGGUCCGaGGc -3'
miRNA:   3'- -CCGCGAaggagGGGCCGCCAGGC-CCu -5'
29513 5' -64.1 NC_006151.1 + 4363 0.7 0.323027
Target:  5'- gGGCGCagagggccucgacggUcgCCUCCCCGGCgcgggGGUCCGcGGc -3'
miRNA:   3'- -CCGCG---------------Aa-GGAGGGGCCG-----CCAGGC-CCu -5'
29513 5' -64.1 NC_006151.1 + 54123 0.7 0.327197
Target:  5'- cGGCgGCUgcggacgggcUCUgCCCCGGCGGcgCCGcGGAg -3'
miRNA:   3'- -CCG-CGA----------AGGaGGGGCCGCCa-GGC-CCU- -5'
29513 5' -64.1 NC_006151.1 + 34456 0.7 0.333526
Target:  5'- cGGCucCUUCCUUCCgGGUccgggcgGGUCCGGGc -3'
miRNA:   3'- -CCGc-GAAGGAGGGgCCG-------CCAGGCCCu -5'
29513 5' -64.1 NC_006151.1 + 112017 0.7 0.334235
Target:  5'- cGGCgGCgaUUUUCCCGGCGGgagCUGGGGc -3'
miRNA:   3'- -CCG-CGaaGGAGGGGCCGCCa--GGCCCU- -5'
29513 5' -64.1 NC_006151.1 + 20753 0.7 0.341383
Target:  5'- cGGCGCg-CCUCCaccgCGGCGGacgcgcgCCGGGc -3'
miRNA:   3'- -CCGCGaaGGAGGg---GCCGCCa------GGCCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.