miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29514 3' -54.8 NC_006151.1 + 104981 0.69 0.806729
Target:  5'- gCCGcCGGCCUCGCUCaacaUCGaccgggcCGC-CUCCg -3'
miRNA:   3'- -GGUuGUCGGAGUGAG----AGC-------GCGaGAGG- -5'
29514 3' -54.8 NC_006151.1 + 100670 0.67 0.918478
Target:  5'- gCGGCGuGCUggCGCUCgUCGCGacgCUCCg -3'
miRNA:   3'- gGUUGU-CGGa-GUGAG-AGCGCga-GAGG- -5'
29514 3' -54.8 NC_006151.1 + 100123 0.66 0.929944
Target:  5'- gCCAGC-GCCUUcCUCggggaccugcuggcaCGCGCcCUCCg -3'
miRNA:   3'- -GGUUGuCGGAGuGAGa--------------GCGCGaGAGG- -5'
29514 3' -54.8 NC_006151.1 + 96496 0.66 0.948423
Target:  5'- aCCAGCuuGCCgcaggcCACguacaCGCGCUCgUCCa -3'
miRNA:   3'- -GGUUGu-CGGa-----GUGaga--GCGCGAG-AGG- -5'
29514 3' -54.8 NC_006151.1 + 96406 0.66 0.948423
Target:  5'- aCGGCGGCCgccacCGCggggaUCaGCGCgagCUCCg -3'
miRNA:   3'- gGUUGUCGGa----GUGag---AG-CGCGa--GAGG- -5'
29514 3' -54.8 NC_006151.1 + 92675 0.7 0.770967
Target:  5'- gCCGGCGGCCggggacgcgCGCUCgcCGCGCg--CCg -3'
miRNA:   3'- -GGUUGUCGGa--------GUGAGa-GCGCGagaGG- -5'
29514 3' -54.8 NC_006151.1 + 91610 0.67 0.917906
Target:  5'- aCCAGCAuGCCggugCGCUgcaggggCUCGCcGUcCUCCa -3'
miRNA:   3'- -GGUUGU-CGGa---GUGA-------GAGCG-CGaGAGG- -5'
29514 3' -54.8 NC_006151.1 + 88355 0.68 0.879942
Target:  5'- aCCAcACGGCCUCGCagcgcaggCUCGgCGCgagcgCgUCCg -3'
miRNA:   3'- -GGU-UGUCGGAGUGa-------GAGC-GCGa----G-AGG- -5'
29514 3' -54.8 NC_006151.1 + 87543 0.69 0.825013
Target:  5'- cCCAGCcgcccguccaGGCCUCGgUCUCG-GCcccggcggacgUCUCCg -3'
miRNA:   3'- -GGUUG----------UCGGAGUgAGAGCgCG-----------AGAGG- -5'
29514 3' -54.8 NC_006151.1 + 86566 0.68 0.865275
Target:  5'- uCCGGCAGCuCUCgGCgCggGCGCgCUCCg -3'
miRNA:   3'- -GGUUGUCG-GAG-UGaGagCGCGaGAGG- -5'
29514 3' -54.8 NC_006151.1 + 85589 0.66 0.924071
Target:  5'- gCAACAaCUUCcaGCUCggCGCGCUCgugCCc -3'
miRNA:   3'- gGUUGUcGGAG--UGAGa-GCGCGAGa--GG- -5'
29514 3' -54.8 NC_006151.1 + 84160 0.66 0.924071
Target:  5'- gCCAGCuGCgCg-ACUCggCGCGC-CUCCu -3'
miRNA:   3'- -GGUUGuCG-GagUGAGa-GCGCGaGAGG- -5'
29514 3' -54.8 NC_006151.1 + 82025 0.72 0.668836
Target:  5'- gCCGACAGCUgggcgagguagucgUCGCUCUCGUGCa---- -3'
miRNA:   3'- -GGUUGUCGG--------------AGUGAGAGCGCGagagg -5'
29514 3' -54.8 NC_006151.1 + 80505 0.67 0.891037
Target:  5'- uCCAGCAGCCUUcccccguggaUgGCGCUCcCCg -3'
miRNA:   3'- -GGUUGUCGGAGugag------AgCGCGAGaGG- -5'
29514 3' -54.8 NC_006151.1 + 72110 0.66 0.934532
Target:  5'- gCGGCAGCgUCAUggggaaGCGCagCUCCa -3'
miRNA:   3'- gGUUGUCGgAGUGagag--CGCGa-GAGG- -5'
29514 3' -54.8 NC_006151.1 + 68901 0.7 0.798673
Target:  5'- -gGACGGCCUCGCggUCGCGCg---- -3'
miRNA:   3'- ggUUGUCGGAGUGagAGCGCGagagg -5'
29514 3' -54.8 NC_006151.1 + 67662 0.67 0.912645
Target:  5'- aCAGCacgcggaagaGGCCcgagUCGCUCgCGCGCagCUCCc -3'
miRNA:   3'- gGUUG----------UCGG----AGUGAGaGCGCGa-GAGG- -5'
29514 3' -54.8 NC_006151.1 + 66724 0.66 0.934532
Target:  5'- gUCAACcGCUUCGCgCUCcugucgcgGCGCUCcuUCCg -3'
miRNA:   3'- -GGUUGuCGGAGUGaGAG--------CGCGAG--AGG- -5'
29514 3' -54.8 NC_006151.1 + 66517 0.67 0.918478
Target:  5'- uUCGcCGGgCUCGCgcgcgC-CGCGCUCUUCg -3'
miRNA:   3'- -GGUuGUCgGAGUGa----GaGCGCGAGAGG- -5'
29514 3' -54.8 NC_006151.1 + 66246 0.7 0.750889
Target:  5'- cUCGACGgugcgcGCCUugaagaCGCUCUCGCGCUgaaaggcCUCCu -3'
miRNA:   3'- -GGUUGU------CGGA------GUGAGAGCGCGA-------GAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.