miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29514 3' -54.8 NC_006151.1 + 68901 0.7 0.798673
Target:  5'- -gGACGGCCUCGCggUCGCGCg---- -3'
miRNA:   3'- ggUUGUCGGAGUGagAGCGCGagagg -5'
29514 3' -54.8 NC_006151.1 + 104981 0.69 0.806729
Target:  5'- gCCGcCGGCCUCGCUCaacaUCGaccgggcCGC-CUCCg -3'
miRNA:   3'- -GGUuGUCGGAGUGAG----AGC-------GCGaGAGG- -5'
29514 3' -54.8 NC_006151.1 + 135916 0.69 0.807617
Target:  5'- cCCGGCGGUCgUGCg--CGCGCUCUgCCg -3'
miRNA:   3'- -GGUUGUCGGaGUGagaGCGCGAGA-GG- -5'
29514 3' -54.8 NC_006151.1 + 39162 0.69 0.816399
Target:  5'- gCGGCGGCCUCucggcGCUgCUCGcCGC-CUUCg -3'
miRNA:   3'- gGUUGUCGGAG-----UGA-GAGC-GCGaGAGG- -5'
29514 3' -54.8 NC_006151.1 + 59502 0.69 0.816399
Target:  5'- cCCGGCGGCCUcCGCgacgCGCGCgcagCgCCg -3'
miRNA:   3'- -GGUUGUCGGA-GUGaga-GCGCGa---GaGG- -5'
29514 3' -54.8 NC_006151.1 + 87543 0.69 0.825013
Target:  5'- cCCAGCcgcccguccaGGCCUCGgUCUCG-GCcccggcggacgUCUCCg -3'
miRNA:   3'- -GGUUG----------UCGGAGUgAGAGCgCG-----------AGAGG- -5'
29514 3' -54.8 NC_006151.1 + 35851 0.69 0.833449
Target:  5'- uCC-GCcGCC-CGCUCUcCGCGCUCggcgCCc -3'
miRNA:   3'- -GGuUGuCGGaGUGAGA-GCGCGAGa---GG- -5'
29514 3' -54.8 NC_006151.1 + 31588 0.69 0.841701
Target:  5'- -gGGCGGCg-CGCUC-CGCGCUCcCCc -3'
miRNA:   3'- ggUUGUCGgaGUGAGaGCGCGAGaGG- -5'
29514 3' -54.8 NC_006151.1 + 113815 0.68 0.84976
Target:  5'- gCC-ACGGCCUCGCgCUCGU-CUC-CCu -3'
miRNA:   3'- -GGuUGUCGGAGUGaGAGCGcGAGaGG- -5'
29514 3' -54.8 NC_006151.1 + 139222 0.68 0.857621
Target:  5'- gCGACGcuGCCgCACaUCgCGCGCgUCUCCg -3'
miRNA:   3'- gGUUGU--CGGaGUG-AGaGCGCG-AGAGG- -5'
29514 3' -54.8 NC_006151.1 + 38409 0.68 0.857621
Target:  5'- cCCucCGGCCUCcccgGCUC-CGgGCcCUCCa -3'
miRNA:   3'- -GGuuGUCGGAG----UGAGaGCgCGaGAGG- -5'
29514 3' -54.8 NC_006151.1 + 12797 0.68 0.857621
Target:  5'- cCCGGCGcGCC-CGCUCccucCGCGUccccUCUCCc -3'
miRNA:   3'- -GGUUGU-CGGaGUGAGa---GCGCG----AGAGG- -5'
29514 3' -54.8 NC_006151.1 + 29896 0.68 0.857621
Target:  5'- gCCAACcuUCUCcCgCUCGCGCUCcCCg -3'
miRNA:   3'- -GGUUGucGGAGuGaGAGCGCGAGaGG- -5'
29514 3' -54.8 NC_006151.1 + 137761 0.68 0.857621
Target:  5'- uCC-GCGGCCUgGCg--CGCGUgCUCCa -3'
miRNA:   3'- -GGuUGUCGGAgUGagaGCGCGaGAGG- -5'
29514 3' -54.8 NC_006151.1 + 31137 0.68 0.865275
Target:  5'- -aAAUAGCUUUuaGCUCg-GCGCUCUCUc -3'
miRNA:   3'- ggUUGUCGGAG--UGAGagCGCGAGAGG- -5'
29514 3' -54.8 NC_006151.1 + 86566 0.68 0.865275
Target:  5'- uCCGGCAGCuCUCgGCgCggGCGCgCUCCg -3'
miRNA:   3'- -GGUUGUCG-GAG-UGaGagCGCGaGAGG- -5'
29514 3' -54.8 NC_006151.1 + 50442 0.68 0.872717
Target:  5'- gCCGGCGGCCUgggCACcgcccgCggGCGCUCgcgCCa -3'
miRNA:   3'- -GGUUGUCGGA---GUGa-----GagCGCGAGa--GG- -5'
29514 3' -54.8 NC_006151.1 + 88355 0.68 0.879942
Target:  5'- aCCAcACGGCCUCGCagcgcaggCUCGgCGCgagcgCgUCCg -3'
miRNA:   3'- -GGU-UGUCGGAGUGa-------GAGC-GCGa----G-AGG- -5'
29514 3' -54.8 NC_006151.1 + 125473 0.68 0.879942
Target:  5'- gCC-ACGGCCgCGCUCggccaGCGCgUCUCg -3'
miRNA:   3'- -GGuUGUCGGaGUGAGag---CGCG-AGAGg -5'
29514 3' -54.8 NC_006151.1 + 106129 0.68 0.88417
Target:  5'- --cGCGGCCgugcuggccacgaCGCUCUCGCGCacCUUCg -3'
miRNA:   3'- gguUGUCGGa------------GUGAGAGCGCGa-GAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.