miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29514 3' -54.8 NC_006151.1 + 66517 0.67 0.918478
Target:  5'- uUCGcCGGgCUCGCgcgcgC-CGCGCUCUUCg -3'
miRNA:   3'- -GGUuGUCgGAGUGa----GaGCGCGAGAGG- -5'
29514 3' -54.8 NC_006151.1 + 100670 0.67 0.918478
Target:  5'- gCGGCGuGCUggCGCUCgUCGCGacgCUCCg -3'
miRNA:   3'- gGUUGU-CGGa-GUGAG-AGCGCga-GAGG- -5'
29514 3' -54.8 NC_006151.1 + 91610 0.67 0.917906
Target:  5'- aCCAGCAuGCCggugCGCUgcaggggCUCGCcGUcCUCCa -3'
miRNA:   3'- -GGUUGU-CGGa---GUGA-------GAGCG-CGaGAGG- -5'
29514 3' -54.8 NC_006151.1 + 35702 0.67 0.912645
Target:  5'- uCCGACcGUCUcCGCUCcggCGCGgaCUCUg -3'
miRNA:   3'- -GGUUGuCGGA-GUGAGa--GCGCgaGAGG- -5'
29514 3' -54.8 NC_006151.1 + 67662 0.67 0.912645
Target:  5'- aCAGCacgcggaagaGGCCcgagUCGCUCgCGCGCagCUCCc -3'
miRNA:   3'- gGUUG----------UCGG----AGUGAGaGCGCGa-GAGG- -5'
29514 3' -54.8 NC_006151.1 + 132484 0.67 0.906573
Target:  5'- uCCAGCAGgCgcgcguagCGCUcCUCGCGCgC-CCg -3'
miRNA:   3'- -GGUUGUCgGa-------GUGA-GAGCGCGaGaGG- -5'
29514 3' -54.8 NC_006151.1 + 116374 0.67 0.906573
Target:  5'- uCCAGgucCAGCUUgCGCUCgccgaGCGC-CUCCu -3'
miRNA:   3'- -GGUU---GUCGGA-GUGAGag---CGCGaGAGG- -5'
29514 3' -54.8 NC_006151.1 + 36433 0.67 0.900263
Target:  5'- cCCGGCcuCCUC-CUC-CG-GCUCUCCc -3'
miRNA:   3'- -GGUUGucGGAGuGAGaGCgCGAGAGG- -5'
29514 3' -54.8 NC_006151.1 + 122796 0.67 0.89372
Target:  5'- --cGCGGCCUCGCccgacgagcgccUCgagGCGCUCaUCCg -3'
miRNA:   3'- gguUGUCGGAGUG------------AGag-CGCGAG-AGG- -5'
29514 3' -54.8 NC_006151.1 + 31849 0.67 0.89372
Target:  5'- aCCcGCGGCgUCAC-C-C-CGCUCUCCc -3'
miRNA:   3'- -GGuUGUCGgAGUGaGaGcGCGAGAGG- -5'
29514 3' -54.8 NC_006151.1 + 80505 0.67 0.891037
Target:  5'- uCCAGCAGCCUUcccccguggaUgGCGCUCcCCg -3'
miRNA:   3'- -GGUUGUCGGAGugag------AgCGCGAGaGG- -5'
29514 3' -54.8 NC_006151.1 + 8774 0.68 0.889682
Target:  5'- cCCAGuucGCCUCcuccuucuccuccuCUCUCGC-CUCUCCu -3'
miRNA:   3'- -GGUUgu-CGGAGu-------------GAGAGCGcGAGAGG- -5'
29514 3' -54.8 NC_006151.1 + 4036 0.68 0.886944
Target:  5'- uCCAgGCGGCCUCGCgggCGCGggCcCCg -3'
miRNA:   3'- -GGU-UGUCGGAGUGagaGCGCgaGaGG- -5'
29514 3' -54.8 NC_006151.1 + 106129 0.68 0.88417
Target:  5'- --cGCGGCCgugcuggccacgaCGCUCUCGCGCacCUUCg -3'
miRNA:   3'- gguUGUCGGa------------GUGAGAGCGCGa-GAGG- -5'
29514 3' -54.8 NC_006151.1 + 88355 0.68 0.879942
Target:  5'- aCCAcACGGCCUCGCagcgcaggCUCGgCGCgagcgCgUCCg -3'
miRNA:   3'- -GGU-UGUCGGAGUGa-------GAGC-GCGa----G-AGG- -5'
29514 3' -54.8 NC_006151.1 + 125473 0.68 0.879942
Target:  5'- gCC-ACGGCCgCGCUCggccaGCGCgUCUCg -3'
miRNA:   3'- -GGuUGUCGGaGUGAGag---CGCG-AGAGg -5'
29514 3' -54.8 NC_006151.1 + 50442 0.68 0.872717
Target:  5'- gCCGGCGGCCUgggCACcgcccgCggGCGCUCgcgCCa -3'
miRNA:   3'- -GGUUGUCGGA---GUGa-----GagCGCGAGa--GG- -5'
29514 3' -54.8 NC_006151.1 + 86566 0.68 0.865275
Target:  5'- uCCGGCAGCuCUCgGCgCggGCGCgCUCCg -3'
miRNA:   3'- -GGUUGUCG-GAG-UGaGagCGCGaGAGG- -5'
29514 3' -54.8 NC_006151.1 + 31137 0.68 0.865275
Target:  5'- -aAAUAGCUUUuaGCUCg-GCGCUCUCUc -3'
miRNA:   3'- ggUUGUCGGAG--UGAGagCGCGAGAGG- -5'
29514 3' -54.8 NC_006151.1 + 139222 0.68 0.857621
Target:  5'- gCGACGcuGCCgCACaUCgCGCGCgUCUCCg -3'
miRNA:   3'- gGUUGU--CGGaGUG-AGaGCGCG-AGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.