miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29514 3' -54.8 NC_006151.1 + 9275 1.13 0.002124
Target:  5'- gCCAACAGCCUCACUCUCGCGCUCUCCc -3'
miRNA:   3'- -GGUUGUCGGAGUGAGAGCGCGAGAGG- -5'
29514 3' -54.8 NC_006151.1 + 122690 0.77 0.390693
Target:  5'- gCGGCGGCCguggagCUCGCGCUCUUCg -3'
miRNA:   3'- gGUUGUCGGaguga-GAGCGCGAGAGG- -5'
29514 3' -54.8 NC_006151.1 + 55714 0.77 0.390693
Target:  5'- uCCAACAGCuccauCUCGCUCauccUCGCGCcguacuucuUCUCCa -3'
miRNA:   3'- -GGUUGUCG-----GAGUGAG----AGCGCG---------AGAGG- -5'
29514 3' -54.8 NC_006151.1 + 136346 0.77 0.413031
Target:  5'- cCCAGCGGCCUggaccccgcggggcUGCUCUCguucgcgGCGCUCUCg -3'
miRNA:   3'- -GGUUGUCGGA--------------GUGAGAG-------CGCGAGAGg -5'
29514 3' -54.8 NC_006151.1 + 38089 0.74 0.53924
Target:  5'- -uGACGGCCgCGCUgCUCGCGCUCcgcgacgcgaUCCc -3'
miRNA:   3'- ggUUGUCGGaGUGA-GAGCGCGAG----------AGG- -5'
29514 3' -54.8 NC_006151.1 + 115771 0.74 0.559319
Target:  5'- uCCAgcagcACGGCCUC-CUCgggCGCGCUCgUCg -3'
miRNA:   3'- -GGU-----UGUCGGAGuGAGa--GCGCGAG-AGg -5'
29514 3' -54.8 NC_006151.1 + 57481 0.74 0.579602
Target:  5'- gCGGCGGCCUCGCaggCgacgcgcaCGCGCUCggCCg -3'
miRNA:   3'- gGUUGUCGGAGUGa--Ga-------GCGCGAGa-GG- -5'
29514 3' -54.8 NC_006151.1 + 29856 0.74 0.579602
Target:  5'- cCCAGCccCCUCuccaguucccGCUCUCGCuCUCUCCu -3'
miRNA:   3'- -GGUUGucGGAG----------UGAGAGCGcGAGAGG- -5'
29514 3' -54.8 NC_006151.1 + 55570 0.73 0.589804
Target:  5'- gCCAACAGCUUC-CagUCGCGCUaCgugCCg -3'
miRNA:   3'- -GGUUGUCGGAGuGagAGCGCGA-Ga--GG- -5'
29514 3' -54.8 NC_006151.1 + 7647 0.73 0.620566
Target:  5'- aCCcGC-GCCUCGCgCUCgGCGCgcgCUCCg -3'
miRNA:   3'- -GGuUGuCGGAGUGaGAG-CGCGa--GAGG- -5'
29514 3' -54.8 NC_006151.1 + 51073 0.73 0.630848
Target:  5'- gCGGCGGCCUCcuccGCUCgccCGCccCUCUCCg -3'
miRNA:   3'- gGUUGUCGGAG----UGAGa--GCGc-GAGAGG- -5'
29514 3' -54.8 NC_006151.1 + 82025 0.72 0.668836
Target:  5'- gCCGACAGCUgggcgagguagucgUCGCUCUCGUGCa---- -3'
miRNA:   3'- -GGUUGUCGG--------------AGUGAGAGCGCGagagg -5'
29514 3' -54.8 NC_006151.1 + 64405 0.72 0.689225
Target:  5'- gCAGCAGCguccacaggucgcuCUCGCUCUgCGCGCgcguggccgcCUCCa -3'
miRNA:   3'- gGUUGUCG--------------GAGUGAGA-GCGCGa---------GAGG- -5'
29514 3' -54.8 NC_006151.1 + 34235 0.72 0.69227
Target:  5'- cCCGACgaGGCCgagcCGgUCUCGCGCcccCUCCc -3'
miRNA:   3'- -GGUUG--UCGGa---GUgAGAGCGCGa--GAGG- -5'
29514 3' -54.8 NC_006151.1 + 117285 0.71 0.722415
Target:  5'- gCCGACAGCgCgcgCGCgagcugCUCgGCGCUCgCCa -3'
miRNA:   3'- -GGUUGUCG-Ga--GUGa-----GAG-CGCGAGaGG- -5'
29514 3' -54.8 NC_006151.1 + 139255 0.71 0.73232
Target:  5'- gCGACGGCCaCGC-C-CGCGCgCUCCg -3'
miRNA:   3'- gGUUGUCGGaGUGaGaGCGCGaGAGG- -5'
29514 3' -54.8 NC_006151.1 + 66246 0.7 0.750889
Target:  5'- cUCGACGgugcgcGCCUugaagaCGCUCUCGCGCUgaaaggcCUCCu -3'
miRNA:   3'- -GGUUGU------CGGA------GUGAGAGCGCGA-------GAGG- -5'
29514 3' -54.8 NC_006151.1 + 131408 0.7 0.751856
Target:  5'- uCCAgACGGgcuCCUC-CUcCUCGCuGCUCUCCu -3'
miRNA:   3'- -GGU-UGUC---GGAGuGA-GAGCG-CGAGAGG- -5'
29514 3' -54.8 NC_006151.1 + 37132 0.7 0.760513
Target:  5'- cCCGGC-GCCcCACUCgccCGCGCcgggccgccaccgUCUCCg -3'
miRNA:   3'- -GGUUGuCGGaGUGAGa--GCGCG-------------AGAGG- -5'
29514 3' -54.8 NC_006151.1 + 92675 0.7 0.770967
Target:  5'- gCCGGCGGCCggggacgcgCGCUCgcCGCGCg--CCg -3'
miRNA:   3'- -GGUUGUCGGa--------GUGAGa-GCGCGagaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.