miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29514 3' -54.8 NC_006151.1 + 4036 0.68 0.886944
Target:  5'- uCCAgGCGGCCUCGCgggCGCGggCcCCg -3'
miRNA:   3'- -GGU-UGUCGGAGUGagaGCGCgaGaGG- -5'
29514 3' -54.8 NC_006151.1 + 7647 0.73 0.620566
Target:  5'- aCCcGC-GCCUCGCgCUCgGCGCgcgCUCCg -3'
miRNA:   3'- -GGuUGuCGGAGUGaGAG-CGCGa--GAGG- -5'
29514 3' -54.8 NC_006151.1 + 8774 0.68 0.889682
Target:  5'- cCCAGuucGCCUCcuccuucuccuccuCUCUCGC-CUCUCCu -3'
miRNA:   3'- -GGUUgu-CGGAGu-------------GAGAGCGcGAGAGG- -5'
29514 3' -54.8 NC_006151.1 + 9275 1.13 0.002124
Target:  5'- gCCAACAGCCUCACUCUCGCGCUCUCCc -3'
miRNA:   3'- -GGUUGUCGGAGUGAGAGCGCGAGAGG- -5'
29514 3' -54.8 NC_006151.1 + 12070 0.66 0.924071
Target:  5'- uUCGGCcccGGCCUCcccgaccuCUCUCacccgcccucccGCGCUCUCUu -3'
miRNA:   3'- -GGUUG---UCGGAGu-------GAGAG------------CGCGAGAGG- -5'
29514 3' -54.8 NC_006151.1 + 12797 0.68 0.857621
Target:  5'- cCCGGCGcGCC-CGCUCccucCGCGUccccUCUCCc -3'
miRNA:   3'- -GGUUGU-CGGaGUGAGa---GCGCG----AGAGG- -5'
29514 3' -54.8 NC_006151.1 + 20745 0.67 0.918478
Target:  5'- aCAGCAGCCgg-----CGCGC-CUCCa -3'
miRNA:   3'- gGUUGUCGGagugagaGCGCGaGAGG- -5'
29514 3' -54.8 NC_006151.1 + 28120 0.66 0.94403
Target:  5'- uCCucguCGGCUcggggcgCGCUC-CGCGCcUCUCCc -3'
miRNA:   3'- -GGuu--GUCGGa------GUGAGaGCGCG-AGAGG- -5'
29514 3' -54.8 NC_006151.1 + 29856 0.74 0.579602
Target:  5'- cCCAGCccCCUCuccaguucccGCUCUCGCuCUCUCCu -3'
miRNA:   3'- -GGUUGucGGAG----------UGAGAGCGcGAGAGG- -5'
29514 3' -54.8 NC_006151.1 + 29896 0.68 0.857621
Target:  5'- gCCAACcuUCUCcCgCUCGCGCUCcCCg -3'
miRNA:   3'- -GGUUGucGGAGuGaGAGCGCGAGaGG- -5'
29514 3' -54.8 NC_006151.1 + 31137 0.68 0.865275
Target:  5'- -aAAUAGCUUUuaGCUCg-GCGCUCUCUc -3'
miRNA:   3'- ggUUGUCGGAG--UGAGagCGCGAGAGG- -5'
29514 3' -54.8 NC_006151.1 + 31588 0.69 0.841701
Target:  5'- -gGGCGGCg-CGCUC-CGCGCUCcCCc -3'
miRNA:   3'- ggUUGUCGgaGUGAGaGCGCGAGaGG- -5'
29514 3' -54.8 NC_006151.1 + 31849 0.67 0.89372
Target:  5'- aCCcGCGGCgUCAC-C-C-CGCUCUCCc -3'
miRNA:   3'- -GGuUGUCGgAGUGaGaGcGCGAGAGG- -5'
29514 3' -54.8 NC_006151.1 + 34235 0.72 0.69227
Target:  5'- cCCGACgaGGCCgagcCGgUCUCGCGCcccCUCCc -3'
miRNA:   3'- -GGUUG--UCGGa---GUgAGAGCGCGa--GAGG- -5'
29514 3' -54.8 NC_006151.1 + 35702 0.67 0.912645
Target:  5'- uCCGACcGUCUcCGCUCcggCGCGgaCUCUg -3'
miRNA:   3'- -GGUUGuCGGA-GUGAGa--GCGCgaGAGG- -5'
29514 3' -54.8 NC_006151.1 + 35851 0.69 0.833449
Target:  5'- uCC-GCcGCC-CGCUCUcCGCGCUCggcgCCc -3'
miRNA:   3'- -GGuUGuCGGaGUGAGA-GCGCGAGa---GG- -5'
29514 3' -54.8 NC_006151.1 + 36433 0.67 0.900263
Target:  5'- cCCGGCcuCCUC-CUC-CG-GCUCUCCc -3'
miRNA:   3'- -GGUUGucGGAGuGAGaGCgCGAGAGG- -5'
29514 3' -54.8 NC_006151.1 + 37132 0.7 0.760513
Target:  5'- cCCGGC-GCCcCACUCgccCGCGCcgggccgccaccgUCUCCg -3'
miRNA:   3'- -GGUUGuCGGaGUGAGa--GCGCG-------------AGAGG- -5'
29514 3' -54.8 NC_006151.1 + 37197 0.66 0.948423
Target:  5'- gCCcuCGGCCUC-CUC-CGC-CUcCUCCu -3'
miRNA:   3'- -GGuuGUCGGAGuGAGaGCGcGA-GAGG- -5'
29514 3' -54.8 NC_006151.1 + 38089 0.74 0.53924
Target:  5'- -uGACGGCCgCGCUgCUCGCGCUCcgcgacgcgaUCCc -3'
miRNA:   3'- ggUUGUCGGaGUGA-GAGCGCGAG----------AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.