Results 101 - 120 of 184 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29515 | 3' | -61.4 | NC_006151.1 | + | 99526 | 0.68 | 0.525502 |
Target: 5'- cUGCAUgGCgccgCGCCCgcccacggagCACGUGGgCGCg -3' miRNA: 3'- aACGUA-CGa---GCGGG----------GUGCACCgGCGg -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 134311 | 0.68 | 0.506331 |
Target: 5'- aUUGCAcgccGCUgCGCCUCGCGccgGGCauCGCCa -3' miRNA: 3'- -AACGUa---CGA-GCGGGGUGCa--CCG--GCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 112221 | 0.68 | 0.496858 |
Target: 5'- -cGCAgucgcGCUCGCUCguCGccGCCGCCa -3' miRNA: 3'- aaCGUa----CGAGCGGGguGCacCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 117617 | 0.68 | 0.496858 |
Target: 5'- -cGUggGCUCGCgcgcgagcgugCCCACGUGcacGCCGCg -3' miRNA: 3'- aaCGuaCGAGCG-----------GGGUGCAC---CGGCGg -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 39916 | 0.68 | 0.496858 |
Target: 5'- -cGCGggcUGCUggaGCCCgACGccgaGGCCGCCc -3' miRNA: 3'- aaCGU---ACGAg--CGGGgUGCa---CCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 116516 | 0.68 | 0.500638 |
Target: 5'- -aGC-UGUUCuGgCCCGCGUcguagacgcggaacuGGCCGCCg -3' miRNA: 3'- aaCGuACGAG-CgGGGUGCA---------------CCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 18522 | 0.68 | 0.505381 |
Target: 5'- -aGCAUGCgCGUCCCcgcccGCGUcggcacccggaacGGCCGCg -3' miRNA: 3'- aaCGUACGaGCGGGG-----UGCA-------------CCGGCGg -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 97698 | 0.68 | 0.506331 |
Target: 5'- -aGCcgGuCUUGCgUCACGUGGCCcaggaGCCc -3' miRNA: 3'- aaCGuaC-GAGCGgGGUGCACCGG-----CGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 99631 | 0.68 | 0.506331 |
Target: 5'- -cGCGcGCgagGCCCucaaCACGUGGCuCGCCu -3' miRNA: 3'- aaCGUaCGag-CGGG----GUGCACCG-GCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 75405 | 0.69 | 0.445407 |
Target: 5'- gUGCGUGCgcggguccgggagGCCCgGCGUGGgCGCg -3' miRNA: 3'- aACGUACGag-----------CGGGgUGCACCgGCGg -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 71933 | 0.69 | 0.450779 |
Target: 5'- --uCAUGUUCaGCaCCagcgagCGCGUGGCCGCCu -3' miRNA: 3'- aacGUACGAG-CG-GG------GUGCACCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 92655 | 0.69 | 0.450779 |
Target: 5'- -gGCAaggcGCUCGCCCUGCugccGGCgGCCg -3' miRNA: 3'- aaCGUa---CGAGCGGGGUGca--CCGgCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 117003 | 0.69 | 0.450779 |
Target: 5'- -cGCAgcaccacgcGCUC-CCCCGCGggcccgGGCCGCa -3' miRNA: 3'- aaCGUa--------CGAGcGGGGUGCa-----CCGGCGg -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 58856 | 0.69 | 0.459811 |
Target: 5'- -cGCGUggaGCUCGCCCgGCGcgccgGGuCCGUCc -3' miRNA: 3'- aaCGUA---CGAGCGGGgUGCa----CC-GGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 102857 | 0.69 | 0.459811 |
Target: 5'- -gGCGcGCagCGCUuCCGCGUGGCCaacGCCg -3' miRNA: 3'- aaCGUaCGa-GCGG-GGUGCACCGG---CGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 141597 | 0.69 | 0.459811 |
Target: 5'- -gGCGagaGC-CGCCCgGCGaGGCUGCCg -3' miRNA: 3'- aaCGUa--CGaGCGGGgUGCaCCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 137710 | 0.69 | 0.466191 |
Target: 5'- -cGCGUGUgcaCGCCCUGCcgucgccguacgcgGUGGCCGgCg -3' miRNA: 3'- aaCGUACGa--GCGGGGUG--------------CACCGGCgG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 72817 | 0.69 | 0.468939 |
Target: 5'- -----aGCUCGCcggcgCCCACG-GGCCGCUu -3' miRNA: 3'- aacguaCGAGCG-----GGGUGCaCCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 39003 | 0.69 | 0.468939 |
Target: 5'- -cGCGccGCggCGCCCCGCuccGCCGCCg -3' miRNA: 3'- aaCGUa-CGa-GCGGGGUGcacCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 769 | 0.69 | 0.441845 |
Target: 5'- -gGCucccCUCGCgCCACGcGGUCGCCg -3' miRNA: 3'- aaCGuac-GAGCGgGGUGCaCCGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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