miRNA display CGI


Results 61 - 80 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29520 3' -50.1 NC_006151.1 + 113106 0.7 0.953477
Target:  5'- -------cGGGGGCGGGGCcgc--GGa -3'
miRNA:   3'- gcuuuuuuCCCCCGCCCCGaauuuCC- -5'
29520 3' -50.1 NC_006151.1 + 110389 0.7 0.953477
Target:  5'- gGGAAuuGGGGGGauuGGGGaacuugugggaCUUGGGGGa -3'
miRNA:   3'- gCUUUuuUCCCCCg--CCCC-----------GAAUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 22510 0.7 0.946544
Target:  5'- aGAGGGGGGGaaucgcgggggagucGGGCGGGGCcgGGucAGGc -3'
miRNA:   3'- gCUUUUUUCC---------------CCCGCCCCGaaUU--UCC- -5'
29520 3' -50.1 NC_006151.1 + 30875 0.7 0.94471
Target:  5'- gCGGAGGAGGGGGGaagaGGcGGCgagc-GGa -3'
miRNA:   3'- -GCUUUUUUCCCCCg---CC-CCGaauuuCC- -5'
29520 3' -50.1 NC_006151.1 + 10399 0.7 0.94471
Target:  5'- gGAGGGGGGGGGagaGCGGGGUgacgccgcGGGu -3'
miRNA:   3'- gCUUUUUUCCCC---CGCCCCGaauu----UCC- -5'
29520 3' -50.1 NC_006151.1 + 9550 0.7 0.94471
Target:  5'- aGAAGAAAcGGGGaaGCGGGG---GAAGGa -3'
miRNA:   3'- gCUUUUUU-CCCC--CGCCCCgaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 8064 0.7 0.944245
Target:  5'- aGggGAGccaagauggcgacGGGGcguGGCGGGGCguggcAGAGGg -3'
miRNA:   3'- gCuuUUU-------------UCCC---CCGCCCCGaa---UUUCC- -5'
29520 3' -50.1 NC_006151.1 + 10041 0.7 0.943308
Target:  5'- aGGAAAAacGGGGGaGCGGGaGCggcucccgaguccggGAAGGa -3'
miRNA:   3'- gCUUUUU--UCCCC-CGCCC-CGaa-------------UUUCC- -5'
29520 3' -50.1 NC_006151.1 + 30325 0.71 0.939946
Target:  5'- aCGAAAgauGAGGaGGcGGCGGcGGCgcGAGGGc -3'
miRNA:   3'- -GCUUU---UUUC-CC-CCGCC-CCGaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 14477 0.71 0.939946
Target:  5'- gCGGGugggcGGGuGGGCGGGGgUcgGGAGGg -3'
miRNA:   3'- -GCUUuuu--UCC-CCCGCCCCgAa-UUUCC- -5'
29520 3' -50.1 NC_006151.1 + 30031 0.71 0.939946
Target:  5'- gGGGAGGAGGGGGgGGaGGagUGAgcGGGg -3'
miRNA:   3'- gCUUUUUUCCCCCgCC-CCgaAUU--UCC- -5'
29520 3' -50.1 NC_006151.1 + 10451 0.71 0.939946
Target:  5'- aGGGAGGAGGaGGaggacGCGGcGGCggUGAAGGa -3'
miRNA:   3'- gCUUUUUUCC-CC-----CGCC-CCGa-AUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 33256 0.71 0.934926
Target:  5'- gGGGAAGGGuGGGGCGGuGGCg------ -3'
miRNA:   3'- gCUUUUUUC-CCCCGCC-CCGaauuucc -5'
29520 3' -50.1 NC_006151.1 + 143094 0.71 0.929647
Target:  5'- gGguAGGAGGGGGauuGGGGUUggcAGGGa -3'
miRNA:   3'- gCuuUUUUCCCCCg--CCCCGAau-UUCC- -5'
29520 3' -50.1 NC_006151.1 + 80325 0.71 0.929647
Target:  5'- aGGAGuuuuGGGGGGacCGGGGC--GAGGGc -3'
miRNA:   3'- gCUUUuu--UCCCCC--GCCCCGaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 93432 0.71 0.92856
Target:  5'- aGGAGGAGGGGGGCgagcgGGGGUcgccgccgcGGGg -3'
miRNA:   3'- gCUUUUUUCCCCCG-----CCCCGaauu-----UCC- -5'
29520 3' -50.1 NC_006151.1 + 110793 0.71 0.918313
Target:  5'- gCGggGcuagggcGGGGGGCGaGGGCa-GAAGGu -3'
miRNA:   3'- -GCuuUuu-----UCCCCCGC-CCCGaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 43900 0.71 0.918313
Target:  5'- gCGcgGAGAGGGGuaGGGGag-GGGGGa -3'
miRNA:   3'- -GCuuUUUUCCCCcgCCCCgaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 143128 0.71 0.918313
Target:  5'- aGguAGGAGGGGGauuGGGGUUggcAGGGa -3'
miRNA:   3'- gCuuUUUUCCCCCg--CCCCGAau-UUCC- -5'
29520 3' -50.1 NC_006151.1 + 15849 0.71 0.918313
Target:  5'- aCGAAGAcgGAGaGGGCGaggaGGGCggGAAGGa -3'
miRNA:   3'- -GCUUUU--UUCcCCCGC----CCCGaaUUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.