miRNA display CGI


Results 41 - 60 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29520 3' -50.1 NC_006151.1 + 16210 0.69 0.976653
Target:  5'- nGGAGAGGGGaguGGGaUGGGGUggagacggUGGAGGg -3'
miRNA:   3'- gCUUUUUUCC---CCC-GCCCCGa-------AUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 16245 0.69 0.976653
Target:  5'- nGGAGAGGGGaguGGGaUGGGGUggagacggUGGAGGg -3'
miRNA:   3'- gCUUUUUUCC---CCC-GCCCCGa-------AUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 16280 0.69 0.976653
Target:  5'- nGGAGAGGGGaguGGGaUGGGGUggagacggUGGAGGg -3'
miRNA:   3'- gCUUUUUUCC---CCC-GCCCCGa-------AUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 16315 0.69 0.976653
Target:  5'- nGGAGAGGGGaguGGGaUGGGGUggagacggUGGAGGg -3'
miRNA:   3'- gCUUUUUUCC---CCC-GCCCCGa-------AUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 16350 0.69 0.976653
Target:  5'- nGGAGAGGGGaguGGGaUGGGGUggagacggUGGAGGg -3'
miRNA:   3'- gCUUUUUUCC---CCC-GCCCCGa-------AUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 16385 0.69 0.976653
Target:  5'- nGGAGAGGGGaguGGGaUGGGGUggagacggUGGAGGg -3'
miRNA:   3'- gCUUUUUUCC---CCC-GCCCCGa-------AUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 16420 0.69 0.976653
Target:  5'- nGGAGAGGGGaguGGGaUGGGGUggagacggUGGAGGg -3'
miRNA:   3'- gCUUUUUUCC---CCC-GCCCCGa-------AUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 16455 0.69 0.976653
Target:  5'- nGGAGAGGGGaguGGGaUGGGGUggagacggUGGAGGg -3'
miRNA:   3'- gCUUUUUUCC---CCC-GCCCCGa-------AUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 16490 0.69 0.976653
Target:  5'- nGGAGAGGGGaguGGGaUGGGGUggagacggUGGAGGg -3'
miRNA:   3'- gCUUUUUUCC---CCC-GCCCCGa-------AUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 18059 0.69 0.976653
Target:  5'- -------cGGGGaGCGGGGUcccUUGGGGGc -3'
miRNA:   3'- gcuuuuuuCCCC-CGCCCCG---AAUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 41840 0.69 0.975882
Target:  5'- cCGGGAAGcgucauaugcaaauGGGGGGgGGGG---GGAGGa -3'
miRNA:   3'- -GCUUUUU--------------UCCCCCgCCCCgaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 5255 0.69 0.97401
Target:  5'- gCGggGGcccGGGGGGCGGagGGCgagcGGGc -3'
miRNA:   3'- -GCuuUUu--UCCCCCGCC--CCGaauuUCC- -5'
29520 3' -50.1 NC_006151.1 + 110042 0.69 0.97401
Target:  5'- aCGAGGAGGGGGacgaGGaCGGGGac--GAGGa -3'
miRNA:   3'- -GCUUUUUUCCC----CC-GCCCCgaauUUCC- -5'
29520 3' -50.1 NC_006151.1 + 5790 0.69 0.971156
Target:  5'- ------cGGGGGaccaucuccGCGGGGCUgccGAGGGg -3'
miRNA:   3'- gcuuuuuUCCCC---------CGCCCCGAa--UUUCC- -5'
29520 3' -50.1 NC_006151.1 + 93557 0.69 0.971156
Target:  5'- uGGGAAAGuccgccgcGGGGGCGGGcGCgccAAAGa -3'
miRNA:   3'- gCUUUUUU--------CCCCCGCCC-CGaa-UUUCc -5'
29520 3' -50.1 NC_006151.1 + 31661 0.69 0.968083
Target:  5'- gGGAGGGAGGaGGGCGGaGGa---AGGGc -3'
miRNA:   3'- gCUUUUUUCC-CCCGCC-CCgaauUUCC- -5'
29520 3' -50.1 NC_006151.1 + 28503 0.69 0.964785
Target:  5'- --cGGGAAGGGGGCGGuccGGCccgcGGGa -3'
miRNA:   3'- gcuUUUUUCCCCCGCC---CCGaauuUCC- -5'
29520 3' -50.1 NC_006151.1 + 21499 0.69 0.964785
Target:  5'- ------cGGGGGGCGcGGGCgucaccGGGg -3'
miRNA:   3'- gcuuuuuUCCCCCGC-CCCGaauu--UCC- -5'
29520 3' -50.1 NC_006151.1 + 49632 0.69 0.964785
Target:  5'- gCGAGu---GGGGGUGGGccgUGGAGGa -3'
miRNA:   3'- -GCUUuuuuCCCCCGCCCcgaAUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 113106 0.7 0.953477
Target:  5'- -------cGGGGGCGGGGCcgc--GGa -3'
miRNA:   3'- gcuuuuuuCCCCCGCCCCGaauuuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.