miRNA display CGI


Results 41 - 60 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29520 3' -50.1 NC_006151.1 + 12405 0.74 0.811735
Target:  5'- gGAAcugGAGAGGGGGCuGGGUgggguGAGGc -3'
miRNA:   3'- gCUU---UUUUCCCCCGcCCCGaau--UUCC- -5'
29520 3' -50.1 NC_006151.1 + 110586 0.74 0.82075
Target:  5'- gGggGGAcuuGGGGGGacuuggGGGGaCUUGGGGGg -3'
miRNA:   3'- gCuuUUU---UCCCCCg-----CCCC-GAAUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 110626 0.74 0.82075
Target:  5'- gGggGGAcuuGGGGGGacuuggGGGGaCUUGGGGGg -3'
miRNA:   3'- gCuuUUU---UCCCCCg-----CCCC-GAAUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 26297 0.74 0.82075
Target:  5'- gGGGugGGGGGGGUGGGG---GGAGGa -3'
miRNA:   3'- gCUUuuUUCCCCCGCCCCgaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 66925 0.74 0.82958
Target:  5'- aCGAugGAGgcGGGGGCGaGGGC--AAAGGc -3'
miRNA:   3'- -GCU--UUUuuCCCCCGC-CCCGaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 34388 0.73 0.846647
Target:  5'- aGAGAGAuAGaGGGGUGGGGg--AGAGGa -3'
miRNA:   3'- gCUUUUU-UC-CCCCGCCCCgaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 13925 0.73 0.854868
Target:  5'- cCGAAGGGAucgaaccccGGGGGCGGGcGCcccGGGGa -3'
miRNA:   3'- -GCUUUUUU---------CCCCCGCCC-CGaauUUCC- -5'
29520 3' -50.1 NC_006151.1 + 42998 0.73 0.854868
Target:  5'- gCGggGGAGGGcGGCGGGcGCUUGGc-- -3'
miRNA:   3'- -GCuuUUUUCCcCCGCCC-CGAAUUucc -5'
29520 3' -50.1 NC_006151.1 + 71555 0.73 0.854868
Target:  5'- aGGGAGGGGGGGGCGaGGGg--GAcGGg -3'
miRNA:   3'- gCUUUUUUCCCCCGC-CCCgaaUUuCC- -5'
29520 3' -50.1 NC_006151.1 + 44835 0.73 0.854868
Target:  5'- uCGGGAccGGGGcGaGCGGGGUcgUGGAGGg -3'
miRNA:   3'- -GCUUUuuUCCC-C-CGCCCCGa-AUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 44290 0.73 0.86287
Target:  5'- gCGGAAcAGGGGGGaaCGGGGaugcGAAGGg -3'
miRNA:   3'- -GCUUUuUUCCCCC--GCCCCgaa-UUUCC- -5'
29520 3' -50.1 NC_006151.1 + 10892 0.73 0.870647
Target:  5'- gGAGAAAAGGGGGUGccGGCgcgGAccGGGg -3'
miRNA:   3'- gCUUUUUUCCCCCGCc-CCGaa-UU--UCC- -5'
29520 3' -50.1 NC_006151.1 + 141740 0.73 0.870647
Target:  5'- aGGGcgGAGGGGcGCGGGGCg------ -3'
miRNA:   3'- gCUUuuUUCCCC-CGCCCCGaauuucc -5'
29520 3' -50.1 NC_006151.1 + 89170 0.73 0.870647
Target:  5'- gCGAGGcgggcgcGGGGGUcgGGGGCggAGAGGg -3'
miRNA:   3'- -GCUUUuuu----CCCCCG--CCCCGaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 80245 0.73 0.870647
Target:  5'- gGGAGAGAGGGcGGUGGGag--AGAGGg -3'
miRNA:   3'- gCUUUUUUCCC-CCGCCCcgaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 80215 0.73 0.870647
Target:  5'- gGGAGAGAGGGcGGUGGGag--AGAGGg -3'
miRNA:   3'- gCUUUUUUCCC-CCGCCCcgaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 80185 0.73 0.870647
Target:  5'- gGGAGAGAGGGcGGUGGGag--AGAGGg -3'
miRNA:   3'- gCUUUUUUCCC-CCGCCCcgaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 80155 0.73 0.870647
Target:  5'- gGGAGAGAGGGcGGUGGGag--AGAGGg -3'
miRNA:   3'- gCUUUUUUCCC-CCGCCCcgaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 80125 0.73 0.870647
Target:  5'- gGGAGAGAGGGcGGUGGGag--AGAGGg -3'
miRNA:   3'- gCUUUUUUCCC-CCGCCCcgaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 80095 0.73 0.870647
Target:  5'- gGGAGAGAGGGcGGUGGGag--AGAGGg -3'
miRNA:   3'- gCUUUUUUCCC-CCGCCCcgaaUUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.