miRNA display CGI


Results 41 - 60 of 160 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29520 3' -50.1 NC_006151.1 + 16490 0.69 0.976653
Target:  5'- nGGAGAGGGGaguGGGaUGGGGUggagacggUGGAGGg -3'
miRNA:   3'- gCUUUUUUCC---CCC-GCCCCGa-------AUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 16735 0.74 0.811735
Target:  5'- gGGGAAGGGGGGGaaggGGGGagaUGGGGGa -3'
miRNA:   3'- gCUUUUUUCCCCCg---CCCCga-AUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 17275 0.68 0.979093
Target:  5'- -------cGGGGGC-GGGCUgauacgGAGGGg -3'
miRNA:   3'- gcuuuuuuCCCCCGcCCCGAa-----UUUCC- -5'
29520 3' -50.1 NC_006151.1 + 18059 0.69 0.976653
Target:  5'- -------cGGGGaGCGGGGUcccUUGGGGGc -3'
miRNA:   3'- gcuuuuuuCCCC-CGCCCCG---AAUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 20126 0.79 0.575917
Target:  5'- aCGggGcuGGGGGGCGGGcGCcgcGGGGg -3'
miRNA:   3'- -GCuuUuuUCCCCCGCCC-CGaauUUCC- -5'
29520 3' -50.1 NC_006151.1 + 21499 0.69 0.964785
Target:  5'- ------cGGGGGGCGcGGGCgucaccGGGg -3'
miRNA:   3'- gcuuuuuUCCCCCGC-CCCGaauu--UCC- -5'
29520 3' -50.1 NC_006151.1 + 22510 0.7 0.946544
Target:  5'- aGAGGGGGGGaaucgcgggggagucGGGCGGGGCcgGGucAGGc -3'
miRNA:   3'- gCUUUUUUCC---------------CCCGCCCCGaaUU--UCC- -5'
29520 3' -50.1 NC_006151.1 + 22855 0.72 0.905946
Target:  5'- aGGAAGcccAGGagcaGGGCGGGGCUgccgguGGGGg -3'
miRNA:   3'- gCUUUUu--UCC----CCCGCCCCGAau----UUCC- -5'
29520 3' -50.1 NC_006151.1 + 23008 0.72 0.89938
Target:  5'- gCGGGu--GGGGGcGCGGGGgUggUGGAGGc -3'
miRNA:   3'- -GCUUuuuUCCCC-CGCCCCgA--AUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 23424 0.68 0.985283
Target:  5'- cCGGccgu-GGGGGCGauGGGUggGAGGGu -3'
miRNA:   3'- -GCUuuuuuCCCCCGC--CCCGaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 26257 0.78 0.607686
Target:  5'- aGAGGGGAGGGGGagaGGGGCaaacgauGGGg -3'
miRNA:   3'- gCUUUUUUCCCCCg--CCCCGaauu---UCC- -5'
29520 3' -50.1 NC_006151.1 + 26297 0.74 0.82075
Target:  5'- gGGGugGGGGGGGUGGGG---GGAGGa -3'
miRNA:   3'- gCUUuuUUCCCCCGCCCCgaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 27302 0.66 0.995101
Target:  5'- ------uGGGGGGCGuGGGggUcGAGGc -3'
miRNA:   3'- gcuuuuuUCCCCCGC-CCCgaAuUUCC- -5'
29520 3' -50.1 NC_006151.1 + 27324 0.66 0.996822
Target:  5'- gGggGAcGGGGGGCugcuccccgggaccGGGGUcgUGGgccGGGg -3'
miRNA:   3'- gCuuUUuUCCCCCG--------------CCCCGa-AUU---UCC- -5'
29520 3' -50.1 NC_006151.1 + 27476 0.68 0.985283
Target:  5'- uCGAGcgGGGGGucGGCGGGGUggU--GGGa -3'
miRNA:   3'- -GCUUuuUUCCC--CCGCCCCGa-AuuUCC- -5'
29520 3' -50.1 NC_006151.1 + 27505 0.78 0.618326
Target:  5'- aCGggGugGGAGGGGGUgcgaugGGGGCgUGGGGGg -3'
miRNA:   3'- -GCuuU--UUUCCCCCG------CCCCGaAUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 27543 0.86 0.274172
Target:  5'- gGggGGGGGGGGGgGGGGCUgggcuGGGa -3'
miRNA:   3'- gCuuUUUUCCCCCgCCCCGAauu--UCC- -5'
29520 3' -50.1 NC_006151.1 + 27961 0.75 0.783668
Target:  5'- gGAGGGAGGGGGGaCGGGGa--GGAGu -3'
miRNA:   3'- gCUUUUUUCCCCC-GCCCCgaaUUUCc -5'
29520 3' -50.1 NC_006151.1 + 28231 0.66 0.99581
Target:  5'- -----cGAGGGGGCcGGGCcgAcGGGc -3'
miRNA:   3'- gcuuuuUUCCCCCGcCCCGaaUuUCC- -5'
29520 3' -50.1 NC_006151.1 + 28503 0.69 0.964785
Target:  5'- --cGGGAAGGGGGCGGuccGGCccgcGGGa -3'
miRNA:   3'- gcuUUUUUCCCCCGCC---CCGaauuUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.