miRNA display CGI


Results 21 - 40 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29520 3' -50.1 NC_006151.1 + 10892 0.73 0.870647
Target:  5'- gGAGAAAAGGGGGUGccGGCgcgGAccGGGg -3'
miRNA:   3'- gCUUUUUUCCCCCGCc-CCGaa-UU--UCC- -5'
29520 3' -50.1 NC_006151.1 + 11724 0.81 0.464093
Target:  5'- aCGAGAGGGGGGaGCGGGGg-UGAGGGg -3'
miRNA:   3'- -GCUUUUUUCCCcCGCCCCgaAUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 11800 0.82 0.426249
Target:  5'- gCGAGAGGGGcGGGGUGGGGU--GGGGGg -3'
miRNA:   3'- -GCUUUUUUC-CCCCGCCCCGaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 12344 0.75 0.789396
Target:  5'- gGggGAAGGaGGGGCGGGGagcgcgagcGGGa -3'
miRNA:   3'- gCuuUUUUC-CCCCGCCCCgaauu----UCC- -5'
29520 3' -50.1 NC_006151.1 + 12405 0.74 0.811735
Target:  5'- gGAAcugGAGAGGGGGCuGGGUgggguGAGGc -3'
miRNA:   3'- gCUU---UUUUCCCCCGcCCCGaau--UUCC- -5'
29520 3' -50.1 NC_006151.1 + 13925 0.73 0.854868
Target:  5'- cCGAAGGGAucgaaccccGGGGGCGGGcGCcccGGGGa -3'
miRNA:   3'- -GCUUUUUU---------CCCCCGCCC-CGaauUUCC- -5'
29520 3' -50.1 NC_006151.1 + 14477 0.71 0.939946
Target:  5'- gCGGGugggcGGGuGGGCGGGGgUcgGGAGGg -3'
miRNA:   3'- -GCUUuuu--UCC-CCCGCCCCgAa-UUUCC- -5'
29520 3' -50.1 NC_006151.1 + 14510 0.72 0.89938
Target:  5'- uCGggGGAAGGGGG-GGGGUcgu--GGc -3'
miRNA:   3'- -GCuuUUUUCCCCCgCCCCGaauuuCC- -5'
29520 3' -50.1 NC_006151.1 + 15795 0.73 0.878192
Target:  5'- aCGAGGAAGGGGaGGaCGGGGgg-GAAGa -3'
miRNA:   3'- -GCUUUUUUCCC-CC-GCCCCgaaUUUCc -5'
29520 3' -50.1 NC_006151.1 + 15849 0.71 0.918313
Target:  5'- aCGAAGAcgGAGaGGGCGaggaGGGCggGAAGGa -3'
miRNA:   3'- -GCUUUU--UUCcCCCGC----CCCGaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 16114 0.69 0.976653
Target:  5'- aGGGAGAuGGGGGUGGagacGGUggagggAGAGGg -3'
miRNA:   3'- gCUUUUUuCCCCCGCC----CCGaa----UUUCC- -5'
29520 3' -50.1 NC_006151.1 + 16175 0.69 0.976653
Target:  5'- gGGAGAGGGGaguGGGaUGGGGUggagacggUGGAGGg -3'
miRNA:   3'- gCUUUUUUCC---CCC-GCCCCGa-------AUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 16210 0.69 0.976653
Target:  5'- nGGAGAGGGGaguGGGaUGGGGUggagacggUGGAGGg -3'
miRNA:   3'- gCUUUUUUCC---CCC-GCCCCGa-------AUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 16245 0.69 0.976653
Target:  5'- nGGAGAGGGGaguGGGaUGGGGUggagacggUGGAGGg -3'
miRNA:   3'- gCUUUUUUCC---CCC-GCCCCGa-------AUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 16280 0.69 0.976653
Target:  5'- nGGAGAGGGGaguGGGaUGGGGUggagacggUGGAGGg -3'
miRNA:   3'- gCUUUUUUCC---CCC-GCCCCGa-------AUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 16315 0.69 0.976653
Target:  5'- nGGAGAGGGGaguGGGaUGGGGUggagacggUGGAGGg -3'
miRNA:   3'- gCUUUUUUCC---CCC-GCCCCGa-------AUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 16350 0.69 0.976653
Target:  5'- nGGAGAGGGGaguGGGaUGGGGUggagacggUGGAGGg -3'
miRNA:   3'- gCUUUUUUCC---CCC-GCCCCGa-------AUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 16385 0.69 0.976653
Target:  5'- nGGAGAGGGGaguGGGaUGGGGUggagacggUGGAGGg -3'
miRNA:   3'- gCUUUUUUCC---CCC-GCCCCGa-------AUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 16420 0.69 0.976653
Target:  5'- nGGAGAGGGGaguGGGaUGGGGUggagacggUGGAGGg -3'
miRNA:   3'- gCUUUUUUCC---CCC-GCCCCGa-------AUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 16455 0.69 0.976653
Target:  5'- nGGAGAGGGGaguGGGaUGGGGUggagacggUGGAGGg -3'
miRNA:   3'- gCUUUUUUCC---CCC-GCCCCGa-------AUUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.