miRNA display CGI


Results 21 - 40 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29520 3' -50.1 NC_006151.1 + 110389 0.7 0.953477
Target:  5'- gGGAAuuGGGGGGauuGGGGaacuugugggaCUUGGGGGa -3'
miRNA:   3'- gCUUUuuUCCCCCg--CCCC-----------GAAUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 110042 0.69 0.97401
Target:  5'- aCGAGGAGGGGGacgaGGaCGGGGac--GAGGa -3'
miRNA:   3'- -GCUUUUUUCCC----CC-GCCCCgaauUUCC- -5'
29520 3' -50.1 NC_006151.1 + 96694 0.73 0.876702
Target:  5'- uCGAGGAAugcguccgcgccGGGGGCGGcGGCggacGAGGa -3'
miRNA:   3'- -GCUUUUUu-----------CCCCCGCC-CCGaau-UUCC- -5'
29520 3' -50.1 NC_006151.1 + 93557 0.69 0.971156
Target:  5'- uGGGAAAGuccgccgcGGGGGCGGGcGCgccAAAGa -3'
miRNA:   3'- gCUUUUUU--------CCCCCGCCC-CGaa-UUUCc -5'
29520 3' -50.1 NC_006151.1 + 93432 0.71 0.92856
Target:  5'- aGGAGGAGGGGGGCgagcgGGGGUcgccgccgcGGGg -3'
miRNA:   3'- gCUUUUUUCCCCCG-----CCCCGaauu-----UCC- -5'
29520 3' -50.1 NC_006151.1 + 89170 0.73 0.870647
Target:  5'- gCGAGGcgggcgcGGGGGUcgGGGGCggAGAGGg -3'
miRNA:   3'- -GCUUUuuu----CCCCCG--CCCCGaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 80325 0.71 0.929647
Target:  5'- aGGAGuuuuGGGGGGacCGGGGC--GAGGGc -3'
miRNA:   3'- gCUUUuu--UCCCCC--GCCCCGaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 80245 0.73 0.870647
Target:  5'- gGGAGAGAGGGcGGUGGGag--AGAGGg -3'
miRNA:   3'- gCUUUUUUCCC-CCGCCCcgaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 80215 0.73 0.870647
Target:  5'- gGGAGAGAGGGcGGUGGGag--AGAGGg -3'
miRNA:   3'- gCUUUUUUCCC-CCGCCCcgaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 80185 0.73 0.870647
Target:  5'- gGGAGAGAGGGcGGUGGGag--AGAGGg -3'
miRNA:   3'- gCUUUUUUCCC-CCGCCCcgaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 80155 0.73 0.870647
Target:  5'- gGGAGAGAGGGcGGUGGGag--AGAGGg -3'
miRNA:   3'- gCUUUUUUCCC-CCGCCCcgaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 80125 0.73 0.870647
Target:  5'- gGGAGAGAGGGcGGUGGGag--AGAGGg -3'
miRNA:   3'- gCUUUUUUCCC-CCGCCCcgaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 80095 0.73 0.870647
Target:  5'- gGGAGAGAGGGcGGUGGGag--AGAGGg -3'
miRNA:   3'- gCUUUUUUCCC-CCGCCCcgaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 80065 0.73 0.870647
Target:  5'- gGGAGAGAGGGcGGUGGGag--AGAGGg -3'
miRNA:   3'- gCUUUUUUCCC-CCGCCCcgaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 79154 0.72 0.911638
Target:  5'- gCGGGAGAAGGGGGUGagcgagcGGGCaugUGAcgauGGGu -3'
miRNA:   3'- -GCUUUUUUCCCCCGC-------CCCGa--AUU----UCC- -5'
29520 3' -50.1 NC_006151.1 + 78385 0.76 0.71246
Target:  5'- gGGGAGGAGGGGGCGGccacggcGGCUcucGGGc -3'
miRNA:   3'- gCUUUUUUCCCCCGCC-------CCGAauuUCC- -5'
29520 3' -50.1 NC_006151.1 + 75311 0.66 0.996433
Target:  5'- gGAAGGAGGGGuGGCagaGGGugcccauggcguGCUcGAAGGu -3'
miRNA:   3'- gCUUUUUUCCC-CCG---CCC------------CGAaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 73024 0.66 0.994298
Target:  5'- gCGAGGcccAGGGauuGGCGGuGGCgcggUGGGGGu -3'
miRNA:   3'- -GCUUUuu-UCCC---CCGCC-CCGa---AUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 72567 0.72 0.885499
Target:  5'- gCGGGAGGGuGGGGGCGGgugacagagucGGggUGAGGGg -3'
miRNA:   3'- -GCUUUUUU-CCCCCGCC-----------CCgaAUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 71555 0.73 0.854868
Target:  5'- aGGGAGGGGGGGGCGaGGGg--GAcGGg -3'
miRNA:   3'- gCUUUUUUCCCCCGC-CCCgaaUUuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.