miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29520 3' -50.1 NC_006151.1 + 143128 0.71 0.918313
Target:  5'- aGguAGGAGGGGGauuGGGGUUggcAGGGa -3'
miRNA:   3'- gCuuUUUUCCCCCg--CCCCGAau-UUCC- -5'
29520 3' -50.1 NC_006151.1 + 143094 0.71 0.929647
Target:  5'- gGguAGGAGGGGGauuGGGGUUggcAGGGa -3'
miRNA:   3'- gCuuUUUUCCCCCg--CCCCGAau-UUCC- -5'
29520 3' -50.1 NC_006151.1 + 142540 0.84 0.34023
Target:  5'- gGGGAAAGGGGGGaacgaGGGGgUUGGGGGg -3'
miRNA:   3'- gCUUUUUUCCCCCg----CCCCgAAUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 142490 0.76 0.713497
Target:  5'- --nGAAAGGGGGGaacgaGGGGgUUGGGGGa -3'
miRNA:   3'- gcuUUUUUCCCCCg----CCCCgAAUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 142462 0.83 0.356391
Target:  5'- gGGGAAAGGGGGGaacgaGGGGgUUGGGGGa -3'
miRNA:   3'- gCUUUUUUCCCCCg----CCCCgAAUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 142410 0.83 0.356391
Target:  5'- gGGGAAAGGGGGGaacgaGGGGgUUGGGGGa -3'
miRNA:   3'- gCUUUUUUCCCCCg----CCCCgAAUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 142358 0.83 0.356391
Target:  5'- gGGGAAAGGGGGGaacgaGGGGgUUGGGGGa -3'
miRNA:   3'- gCUUUUUUCCCCCg----CCCCgAAUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 141740 0.73 0.870647
Target:  5'- aGGGcgGAGGGGcGCGGGGCg------ -3'
miRNA:   3'- gCUUuuUUCCCC-CGCCCCGaauuucc -5'
29520 3' -50.1 NC_006151.1 + 137603 0.72 0.892563
Target:  5'- uCGGGAuc-GGGGGCGcGGGCg---GGGa -3'
miRNA:   3'- -GCUUUuuuCCCCCGC-CCCGaauuUCC- -5'
29520 3' -50.1 NC_006151.1 + 135084 0.7 0.953477
Target:  5'- uCGGGc-GGGGGcGGCGGGGCcgGgcGGg -3'
miRNA:   3'- -GCUUuuUUCCC-CCGCCCCGaaUuuCC- -5'
29520 3' -50.1 NC_006151.1 + 130935 0.71 0.918313
Target:  5'- -------cGGGGGCgGGGGCggcGGGGGg -3'
miRNA:   3'- gcuuuuuuCCCCCG-CCCCGaa-UUUCC- -5'
29520 3' -50.1 NC_006151.1 + 127921 0.66 0.995743
Target:  5'- uCGggGAgcGGGGGCGgcgagacGGGCac--GGGc -3'
miRNA:   3'- -GCuuUUuuCCCCCGC-------CCCGaauuUCC- -5'
29520 3' -50.1 NC_006151.1 + 117772 0.66 0.994298
Target:  5'- cCGAGGuauAGGcuccGGGCGGGGCg------ -3'
miRNA:   3'- -GCUUUuu-UCC----CCCGCCCCGaauuucc -5'
29520 3' -50.1 NC_006151.1 + 113106 0.7 0.953477
Target:  5'- -------cGGGGGCGGGGCcgc--GGa -3'
miRNA:   3'- gcuuuuuuCCCCCGCCCCGaauuuCC- -5'
29520 3' -50.1 NC_006151.1 + 111667 0.66 0.99581
Target:  5'- gCGGcc-AGGGGGGCGucggcGGGCcgGAAGa -3'
miRNA:   3'- -GCUuuuUUCCCCCGC-----CCCGaaUUUCc -5'
29520 3' -50.1 NC_006151.1 + 110793 0.71 0.918313
Target:  5'- gCGggGcuagggcGGGGGGCGaGGGCa-GAAGGu -3'
miRNA:   3'- -GCuuUuu-----UCCCCCGC-CCCGaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 110626 0.74 0.82075
Target:  5'- gGggGGAcuuGGGGGGacuuggGGGGaCUUGGGGGg -3'
miRNA:   3'- gCuuUUU---UCCCCCg-----CCCC-GAAUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 110586 0.74 0.82075
Target:  5'- gGggGGAcuuGGGGGGacuuggGGGGaCUUGGGGGg -3'
miRNA:   3'- gCuuUUU---UCCCCCg-----CCCC-GAAUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 110548 0.76 0.72383
Target:  5'- gGggGGAcuuGGGGGGauugGGGGaCUUGGGGGg -3'
miRNA:   3'- gCuuUUU---UCCCCCg---CCCC-GAAUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 110491 0.76 0.72383
Target:  5'- uGggGGAcuuGGGGGGauugGGGGaCUUGGGGGg -3'
miRNA:   3'- gCuuUUU---UCCCCCg---CCCC-GAAUUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.