miRNA display CGI


Results 21 - 40 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29520 3' -50.1 NC_006151.1 + 49529 0.77 0.650279
Target:  5'- aCGAGGAGGGGGGaGgGGGGUggGAuGGa -3'
miRNA:   3'- -GCUUUUUUCCCC-CgCCCCGaaUUuCC- -5'
29520 3' -50.1 NC_006151.1 + 44481 0.77 0.650279
Target:  5'- uGGAcgGGGGGGGUGGGGgaUGGuguGGGg -3'
miRNA:   3'- gCUUuuUUCCCCCGCCCCgaAUU---UCC- -5'
29520 3' -50.1 NC_006151.1 + 29800 0.77 0.671517
Target:  5'- aGGGAGGGGaGGGGUGGuGGUggUAGAGGg -3'
miRNA:   3'- gCUUUUUUC-CCCCGCC-CCGa-AUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 8140 0.77 0.682089
Target:  5'- cCGGu--GGGGGGGCGGGuGC--AAAGGg -3'
miRNA:   3'- -GCUuuuUUCCCCCGCCC-CGaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 78385 0.76 0.71246
Target:  5'- gGGGAGGAGGGGGCGGccacggcGGCUcucGGGc -3'
miRNA:   3'- gCUUUUUUCCCCCGCC-------CCGAauuUCC- -5'
29520 3' -50.1 NC_006151.1 + 142490 0.76 0.713497
Target:  5'- --nGAAAGGGGGGaacgaGGGGgUUGGGGGa -3'
miRNA:   3'- gcuUUUUUCCCCCg----CCCCgAAUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 9581 0.76 0.72383
Target:  5'- aCGggGAAGGGGGGaaagggaaaCGGGGaaacgggGAAGGg -3'
miRNA:   3'- -GCuuUUUUCCCCC---------GCCCCgaa----UUUCC- -5'
29520 3' -50.1 NC_006151.1 + 29636 0.76 0.72383
Target:  5'- gGGGAAuuGGGGGUGGGGgaaaUGGGGGg -3'
miRNA:   3'- gCUUUUuuCCCCCGCCCCga--AUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 31400 0.76 0.72383
Target:  5'- ------cGGGGGGcCGGGGCgagggGAAGGg -3'
miRNA:   3'- gcuuuuuUCCCCC-GCCCCGaa---UUUCC- -5'
29520 3' -50.1 NC_006151.1 + 110491 0.76 0.72383
Target:  5'- uGggGGAcuuGGGGGGauugGGGGaCUUGGGGGg -3'
miRNA:   3'- gCuuUUU---UCCCCCg---CCCC-GAAUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 110548 0.76 0.72383
Target:  5'- gGggGGAcuuGGGGGGauugGGGGaCUUGGGGGg -3'
miRNA:   3'- gCuuUUU---UCCCCCg---CCCC-GAAUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 42868 0.76 0.734078
Target:  5'- aCGAuggucGAGGGGGCcgcgagggagaGGGGgUUAGAGGa -3'
miRNA:   3'- -GCUuuu--UUCCCCCG-----------CCCCgAAUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 45592 0.75 0.754274
Target:  5'- cCGAGGGGgcGGGGGGagccccgaCGGGGCgggcgGAAGGg -3'
miRNA:   3'- -GCUUUUU--UCCCCC--------GCCCCGaa---UUUCC- -5'
29520 3' -50.1 NC_006151.1 + 42724 0.75 0.774004
Target:  5'- -aGAGAGAGGGGGCGGGGa------- -3'
miRNA:   3'- gcUUUUUUCCCCCGCCCCgaauuucc -5'
29520 3' -50.1 NC_006151.1 + 27961 0.75 0.783668
Target:  5'- gGAGGGAGGGGGGaCGGGGa--GGAGu -3'
miRNA:   3'- gCUUUUUUCCCCC-GCCCCgaaUUUCc -5'
29520 3' -50.1 NC_006151.1 + 31423 0.75 0.783668
Target:  5'- gGGAAGGGGGGGGaCGGGGUg------ -3'
miRNA:   3'- gCUUUUUUCCCCC-GCCCCGaauuucc -5'
29520 3' -50.1 NC_006151.1 + 12344 0.75 0.789396
Target:  5'- gGggGAAGGaGGGGCGGGGagcgcgagcGGGa -3'
miRNA:   3'- gCuuUUUUC-CCCCGCCCCgaauu----UCC- -5'
29520 3' -50.1 NC_006151.1 + 29447 0.75 0.793184
Target:  5'- gCGggGAGAGGGGacgcggagggaGCGGGcGCgccgggAGAGGa -3'
miRNA:   3'- -GCuuUUUUCCCC-----------CGCCC-CGaa----UUUCC- -5'
29520 3' -50.1 NC_006151.1 + 41307 0.74 0.802543
Target:  5'- uGAGGGGGGGGGGgGGGGgUggu-GGu -3'
miRNA:   3'- gCUUUUUUCCCCCgCCCCgAauuuCC- -5'
29520 3' -50.1 NC_006151.1 + 16735 0.74 0.811735
Target:  5'- gGGGAAGGGGGGGaaggGGGGagaUGGGGGa -3'
miRNA:   3'- gCUUUUUUCCCCCg---CCCCga-AUUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.