miRNA display CGI


Results 41 - 60 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29520 3' -50.1 NC_006151.1 + 75311 0.66 0.996433
Target:  5'- gGAAGGAGGGGuGGCagaGGGugcccauggcguGCUcGAAGGu -3'
miRNA:   3'- gCUUUUUUCCC-CCG---CCC------------CGAaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 49740 0.66 0.996433
Target:  5'- gCGAAgacgGAGAGGGGGacguGGaagacGGCgagGAGGGg -3'
miRNA:   3'- -GCUU----UUUUCCCCCg---CC-----CCGaa-UUUCC- -5'
29520 3' -50.1 NC_006151.1 + 27324 0.66 0.996822
Target:  5'- gGggGAcGGGGGGCugcuccccgggaccGGGGUcgUGGgccGGGg -3'
miRNA:   3'- gCuuUUuUCCCCCG--------------CCCCGa-AUU---UCC- -5'
29520 3' -50.1 NC_006151.1 + 3821 0.66 0.996977
Target:  5'- uGGAcuu-GGugcuGGCGGGGCUgGAGGGc -3'
miRNA:   3'- gCUUuuuuCCc---CCGCCCCGAaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 42058 0.66 0.996977
Target:  5'- uGAA-----GGGGCGGGGCUa----- -3'
miRNA:   3'- gCUUuuuucCCCCGCCCCGAauuucc -5'
29520 3' -50.1 NC_006151.1 + 27302 0.66 0.995101
Target:  5'- ------uGGGGGGCGuGGGggUcGAGGc -3'
miRNA:   3'- gcuuuuuUCCCCCGC-CCCgaAuUUCC- -5'
29520 3' -50.1 NC_006151.1 + 10092 0.66 0.995101
Target:  5'- gCGGAGGAAGGcGGGUGcGGa--GGAGGa -3'
miRNA:   3'- -GCUUUUUUCC-CCCGCcCCgaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 23424 0.68 0.985283
Target:  5'- cCGGccgu-GGGGGCGauGGGUggGAGGGu -3'
miRNA:   3'- -GCUuuuuuCCCCCGC--CCCGaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 30158 0.68 0.986999
Target:  5'- gGAAAGAgagcgcGGGaGGGCGGGuGag-AGAGGu -3'
miRNA:   3'- gCUUUUU------UCC-CCCGCCC-CgaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 41501 0.68 0.986999
Target:  5'- gCGAGGGGAGccaauGGGGCGGGcGCcgcgGAGcGGa -3'
miRNA:   3'- -GCUUUUUUC-----CCCCGCCC-CGaa--UUU-CC- -5'
29520 3' -50.1 NC_006151.1 + 5844 0.67 0.988408
Target:  5'- cCGggGAggcugcgGAGGGGGacgagcgccCGGGGCcgccGGGGg -3'
miRNA:   3'- -GCuuUU-------UUCCCCC---------GCCCCGaau-UUCC- -5'
29520 3' -50.1 NC_006151.1 + 32595 0.67 0.988557
Target:  5'- gGAAGcggGAAGGGGaagcGCGGGGCg------ -3'
miRNA:   3'- gCUUU---UUUCCCC----CGCCCCGaauuucc -5'
29520 3' -50.1 NC_006151.1 + 8484 0.67 0.989965
Target:  5'- uCGGucGGAcGGGGCGGG-CggGGAGGg -3'
miRNA:   3'- -GCUuuUUUcCCCCGCCCcGaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 29281 0.67 0.991235
Target:  5'- uGAGuc-GGGaGGGUGGGGUggGAGcGGa -3'
miRNA:   3'- gCUUuuuUCC-CCCGCCCCGaaUUU-CC- -5'
29520 3' -50.1 NC_006151.1 + 34616 0.67 0.991235
Target:  5'- cCGAGcgcGAGGcgcGGGUGGGGCgaccgcGGGGg -3'
miRNA:   3'- -GCUUuu-UUCC---CCCGCCCCGaau---UUCC- -5'
29520 3' -50.1 NC_006151.1 + 45318 0.67 0.991235
Target:  5'- cCGGGAGGcuGGGaGGGUGGcGGU--GGAGGa -3'
miRNA:   3'- -GCUUUUU--UCC-CCCGCC-CCGaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 30693 0.66 0.994298
Target:  5'- gCGGGcgGGGGGGuGuCGGGGCc---GGGu -3'
miRNA:   3'- -GCUUuuUUCCCC-C-GCCCCGaauuUCC- -5'
29520 3' -50.1 NC_006151.1 + 45027 0.66 0.994298
Target:  5'- aUGAGAAGcgaauGGGGGaagcguggGGGGUgUGGGGGg -3'
miRNA:   3'- -GCUUUUUu----CCCCCg-------CCCCGaAUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 73024 0.66 0.994298
Target:  5'- gCGAGGcccAGGGauuGGCGGuGGCgcggUGGGGGu -3'
miRNA:   3'- -GCUUUuu-UCCC---CCGCC-CCGa---AUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 117772 0.66 0.994298
Target:  5'- cCGAGGuauAGGcuccGGGCGGGGCg------ -3'
miRNA:   3'- -GCUUUuu-UCC----CCCGCCCCGaauuucc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.