Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29521 | 5' | -51.6 | NC_006151.1 | + | 47393 | 0.75 | 0.650754 |
Target: 5'- cUCAGACaGCAcuuugGCCUGGCgCCCgGCCa -3' miRNA: 3'- -GGUUUGaUGUa----UGGACCGaGGGaCGG- -5' |
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29521 | 5' | -51.6 | NC_006151.1 | + | 53690 | 0.74 | 0.723712 |
Target: 5'- cCCGAGCUGCGccUGCacgUGGUUCCCgcggaaGCCg -3' miRNA: 3'- -GGUUUGAUGU--AUGg--ACCGAGGGa-----CGG- -5' |
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29521 | 5' | -51.6 | NC_006151.1 | + | 68628 | 0.74 | 0.723712 |
Target: 5'- gCGAACUgcccgcGCGUcGCC-GGCUCCaCUGCCa -3' miRNA: 3'- gGUUUGA------UGUA-UGGaCCGAGG-GACGG- -5' |
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29521 | 5' | -51.6 | NC_006151.1 | + | 140435 | 0.72 | 0.837294 |
Target: 5'- -aGGAgUACGUGCCcGGCg-CCUGCCu -3' miRNA: 3'- ggUUUgAUGUAUGGaCCGagGGACGG- -5' |
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29521 | 5' | -51.6 | NC_006151.1 | + | 6839 | 0.71 | 0.877091 |
Target: 5'- aCCAu-UUGCAUGCCcGGCcCCCgcggcgGCCa -3' miRNA: 3'- -GGUuuGAUGUAUGGaCCGaGGGa-----CGG- -5' |
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29521 | 5' | -51.6 | NC_006151.1 | + | 98568 | 0.7 | 0.911091 |
Target: 5'- gCCGGGCUGCGcACCUcggccgaguucGGC-CCCgacGCCa -3' miRNA: 3'- -GGUUUGAUGUaUGGA-----------CCGaGGGa--CGG- -5' |
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29521 | 5' | -51.6 | NC_006151.1 | + | 36014 | 0.7 | 0.911091 |
Target: 5'- cCCGAcgGCgGCA-GCCagGGCUCCCggcGCCg -3' miRNA: 3'- -GGUU--UGaUGUaUGGa-CCGAGGGa--CGG- -5' |
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29521 | 5' | -51.6 | NC_006151.1 | + | 129140 | 0.69 | 0.928495 |
Target: 5'- gCCAAagaGCgccgGCGcACaCUGGCUCUCgGCCa -3' miRNA: 3'- -GGUU---UGa---UGUaUG-GACCGAGGGaCGG- -5' |
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29521 | 5' | -51.6 | NC_006151.1 | + | 120017 | 0.69 | 0.928495 |
Target: 5'- ---uGCUGCAggACCUGGCcCUgaGCCa -3' miRNA: 3'- gguuUGAUGUa-UGGACCGaGGgaCGG- -5' |
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29521 | 5' | -51.6 | NC_006151.1 | + | 85674 | 0.69 | 0.943608 |
Target: 5'- --cGACgGCA-ACCUGcGCUUCCUGCUg -3' miRNA: 3'- gguUUGaUGUaUGGAC-CGAGGGACGG- -5' |
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29521 | 5' | -51.6 | NC_006151.1 | + | 86408 | 0.68 | 0.952427 |
Target: 5'- --cAACUACcUGCCcucGGCgUCCCUGUCc -3' miRNA: 3'- gguUUGAUGuAUGGa--CCG-AGGGACGG- -5' |
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29521 | 5' | -51.6 | NC_006151.1 | + | 47072 | 0.68 | 0.956468 |
Target: 5'- cCCGGucCUGCu--CC-GGCUCCCgGCCc -3' miRNA: 3'- -GGUUu-GAUGuauGGaCCGAGGGaCGG- -5' |
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29521 | 5' | -51.6 | NC_006151.1 | + | 55943 | 0.68 | 0.960268 |
Target: 5'- aCGAGCUG---ACCUGGCacgCCCUcCCg -3' miRNA: 3'- gGUUUGAUguaUGGACCGa--GGGAcGG- -5' |
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29521 | 5' | -51.6 | NC_006151.1 | + | 77500 | 0.68 | 0.960268 |
Target: 5'- gCC-AACUACGUGCgcacggagCUGGCgcgCCUcgGCCg -3' miRNA: 3'- -GGuUUGAUGUAUG--------GACCGa--GGGa-CGG- -5' |
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29521 | 5' | -51.6 | NC_006151.1 | + | 83419 | 0.68 | 0.963833 |
Target: 5'- aCCAggUUGCc-GCCggggGGCUCCCcggGCa -3' miRNA: 3'- -GGUuuGAUGuaUGGa---CCGAGGGa--CGg -5' |
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29521 | 5' | -51.6 | NC_006151.1 | + | 118733 | 0.68 | 0.963833 |
Target: 5'- gCAcGGCUACGUGCUgggcccGGCggCCgUGCCa -3' miRNA: 3'- gGU-UUGAUGUAUGGa-----CCGa-GGgACGG- -5' |
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29521 | 5' | -51.6 | NC_006151.1 | + | 62251 | 0.68 | 0.967169 |
Target: 5'- uCC-GGCUACGUGCagguGCUCCCcacGCCg -3' miRNA: 3'- -GGuUUGAUGUAUGgac-CGAGGGa--CGG- -5' |
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29521 | 5' | -51.6 | NC_006151.1 | + | 56264 | 0.67 | 0.97028 |
Target: 5'- gCGuGCUGCAgauguuCCUGGagaCCUGCCc -3' miRNA: 3'- gGUuUGAUGUau----GGACCgagGGACGG- -5' |
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29521 | 5' | -51.6 | NC_006151.1 | + | 100952 | 0.67 | 0.973175 |
Target: 5'- gCAAACgUGgGUGCCcguggaucGGCUCCUgGCCg -3' miRNA: 3'- gGUUUG-AUgUAUGGa-------CCGAGGGaCGG- -5' |
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29521 | 5' | -51.6 | NC_006151.1 | + | 11033 | 0.67 | 0.978343 |
Target: 5'- gCCGGGCcgGCcgGCCgGGggCCCgGCCu -3' miRNA: 3'- -GGUUUGa-UGuaUGGaCCgaGGGaCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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