miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29521 5' -51.6 NC_006151.1 + 3819 0.66 0.989469
Target:  5'- gCUGGACUugGUGCUggcggGGCUggagggCCCggaGCCg -3'
miRNA:   3'- -GGUUUGAugUAUGGa----CCGA------GGGa--CGG- -5'
29521 5' -51.6 NC_006151.1 + 6839 0.71 0.877091
Target:  5'- aCCAu-UUGCAUGCCcGGCcCCCgcggcgGCCa -3'
miRNA:   3'- -GGUuuGAUGUAUGGaCCGaGGGa-----CGG- -5'
29521 5' -51.6 NC_006151.1 + 11033 0.67 0.978343
Target:  5'- gCCGGGCcgGCcgGCCgGGggCCCgGCCu -3'
miRNA:   3'- -GGUUUGa-UGuaUGGaCCgaGGGaCGG- -5'
29521 5' -51.6 NC_006151.1 + 18381 0.66 0.989469
Target:  5'- uCCAGGCUcACGUAC--GGC-CCCUcguaGCCg -3'
miRNA:   3'- -GGUUUGA-UGUAUGgaCCGaGGGA----CGG- -5'
29521 5' -51.6 NC_006151.1 + 28280 0.67 0.980632
Target:  5'- cCCGggGAC-GCGgGCCcGGCUCCCccauugGCCg -3'
miRNA:   3'- -GGU--UUGaUGUaUGGaCCGAGGGa-----CGG- -5'
29521 5' -51.6 NC_006151.1 + 28840 0.67 0.980632
Target:  5'- cCCGggGAC-GCGgGCCcGGCUCCCccauugGCCg -3'
miRNA:   3'- -GGU--UUGaUGUaUGGaCCGAGGGa-----CGG- -5'
29521 5' -51.6 NC_006151.1 + 36014 0.7 0.911091
Target:  5'- cCCGAcgGCgGCA-GCCagGGCUCCCggcGCCg -3'
miRNA:   3'- -GGUU--UGaUGUaUGGa-CCGAGGGa--CGG- -5'
29521 5' -51.6 NC_006151.1 + 39423 0.67 0.978343
Target:  5'- aCCAcguCUACGUccgcguccGCCUGGa-CCCgGCCg -3'
miRNA:   3'- -GGUuu-GAUGUA--------UGGACCgaGGGaCGG- -5'
29521 5' -51.6 NC_006151.1 + 47072 0.68 0.956468
Target:  5'- cCCGGucCUGCu--CC-GGCUCCCgGCCc -3'
miRNA:   3'- -GGUUu-GAUGuauGGaCCGAGGGaCGG- -5'
29521 5' -51.6 NC_006151.1 + 47393 0.75 0.650754
Target:  5'- cUCAGACaGCAcuuugGCCUGGCgCCCgGCCa -3'
miRNA:   3'- -GGUUUGaUGUa----UGGACCGaGGGaCGG- -5'
29521 5' -51.6 NC_006151.1 + 53690 0.74 0.723712
Target:  5'- cCCGAGCUGCGccUGCacgUGGUUCCCgcggaaGCCg -3'
miRNA:   3'- -GGUUUGAUGU--AUGg--ACCGAGGGa-----CGG- -5'
29521 5' -51.6 NC_006151.1 + 54651 0.66 0.988019
Target:  5'- gCGAgcGCUGCGUggacgagcacgACCUGGCcgggCaCCUGCg -3'
miRNA:   3'- gGUU--UGAUGUA-----------UGGACCGa---G-GGACGg -5'
29521 5' -51.6 NC_006151.1 + 55943 0.68 0.960268
Target:  5'- aCGAGCUG---ACCUGGCacgCCCUcCCg -3'
miRNA:   3'- gGUUUGAUguaUGGACCGa--GGGAcGG- -5'
29521 5' -51.6 NC_006151.1 + 56264 0.67 0.97028
Target:  5'- gCGuGCUGCAgauguuCCUGGagaCCUGCCc -3'
miRNA:   3'- gGUuUGAUGUau----GGACCgagGGACGG- -5'
29521 5' -51.6 NC_006151.1 + 60655 0.67 0.980632
Target:  5'- cCCGcGCcGCGU-CCUcGCUCCCgucGCCg -3'
miRNA:   3'- -GGUuUGaUGUAuGGAcCGAGGGa--CGG- -5'
29521 5' -51.6 NC_006151.1 + 62251 0.68 0.967169
Target:  5'- uCC-GGCUACGUGCagguGCUCCCcacGCCg -3'
miRNA:   3'- -GGuUUGAUGUAUGgac-CGAGGGa--CGG- -5'
29521 5' -51.6 NC_006151.1 + 68628 0.74 0.723712
Target:  5'- gCGAACUgcccgcGCGUcGCC-GGCUCCaCUGCCa -3'
miRNA:   3'- gGUUUGA------UGUA-UGGaCCGAGG-GACGG- -5'
29521 5' -51.6 NC_006151.1 + 69092 0.66 0.988019
Target:  5'- gCC-AGCUcgGCGUGCCgccgcaccaGCUCCC-GCCg -3'
miRNA:   3'- -GGuUUGA--UGUAUGGac-------CGAGGGaCGG- -5'
29521 5' -51.6 NC_006151.1 + 76216 0.66 0.98642
Target:  5'- -aGAugUGCGUGCCgucgaGGUUCUC-GCCc -3'
miRNA:   3'- ggUUugAUGUAUGGa----CCGAGGGaCGG- -5'
29521 5' -51.6 NC_006151.1 + 77500 0.68 0.960268
Target:  5'- gCC-AACUACGUGCgcacggagCUGGCgcgCCUcgGCCg -3'
miRNA:   3'- -GGuUUGAUGUAUG--------GACCGa--GGGa-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.