miRNA display CGI


Results 21 - 36 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29521 5' -51.6 NC_006151.1 + 83419 0.68 0.963833
Target:  5'- aCCAggUUGCc-GCCggggGGCUCCCcggGCa -3'
miRNA:   3'- -GGUuuGAUGuaUGGa---CCGAGGGa--CGg -5'
29521 5' -51.6 NC_006151.1 + 85674 0.69 0.943608
Target:  5'- --cGACgGCA-ACCUGcGCUUCCUGCUg -3'
miRNA:   3'- gguUUGaUGUaUGGAC-CGAGGGACGG- -5'
29521 5' -51.6 NC_006151.1 + 86408 0.68 0.952427
Target:  5'- --cAACUACcUGCCcucGGCgUCCCUGUCc -3'
miRNA:   3'- gguUUGAUGuAUGGa--CCG-AGGGACGG- -5'
29521 5' -51.6 NC_006151.1 + 87317 0.66 0.988019
Target:  5'- gCGcACgcCGUGCCgGcGCUCCCggGCCu -3'
miRNA:   3'- gGUuUGauGUAUGGaC-CGAGGGa-CGG- -5'
29521 5' -51.6 NC_006151.1 + 98568 0.7 0.911091
Target:  5'- gCCGGGCUGCGcACCUcggccgaguucGGC-CCCgacGCCa -3'
miRNA:   3'- -GGUUUGAUGUaUGGA-----------CCGaGGGa--CGG- -5'
29521 5' -51.6 NC_006151.1 + 100952 0.67 0.973175
Target:  5'- gCAAACgUGgGUGCCcguggaucGGCUCCUgGCCg -3'
miRNA:   3'- gGUUUG-AUgUAUGGa-------CCGAGGGaCGG- -5'
29521 5' -51.6 NC_006151.1 + 101109 0.66 0.982735
Target:  5'- gUCGGGCgucuCGUGCCUGcGCUCCucccucuccuucCUGCg -3'
miRNA:   3'- -GGUUUGau--GUAUGGAC-CGAGG------------GACGg -5'
29521 5' -51.6 NC_006151.1 + 103026 0.66 0.982735
Target:  5'- aCGAGCgccuCGggGCCUGGUUCgCgCUGCUg -3'
miRNA:   3'- gGUUUGau--GUa-UGGACCGAG-G-GACGG- -5'
29521 5' -51.6 NC_006151.1 + 106988 0.66 0.988019
Target:  5'- -aGAAC-GCGUGCCUGGCgCCgCaGCUg -3'
miRNA:   3'- ggUUUGaUGUAUGGACCGaGG-GaCGG- -5'
29521 5' -51.6 NC_006151.1 + 118733 0.68 0.963833
Target:  5'- gCAcGGCUACGUGCUgggcccGGCggCCgUGCCa -3'
miRNA:   3'- gGU-UUGAUGUAUGGa-----CCGa-GGgACGG- -5'
29521 5' -51.6 NC_006151.1 + 120017 0.69 0.928495
Target:  5'- ---uGCUGCAggACCUGGCcCUgaGCCa -3'
miRNA:   3'- gguuUGAUGUa-UGGACCGaGGgaCGG- -5'
29521 5' -51.6 NC_006151.1 + 120381 0.66 0.981915
Target:  5'- cCCGGACacggccguggACGUGCUcaacggcccgcugGGCUUCCUGCUg -3'
miRNA:   3'- -GGUUUGa---------UGUAUGGa------------CCGAGGGACGG- -5'
29521 5' -51.6 NC_006151.1 + 129140 0.69 0.928495
Target:  5'- gCCAAagaGCgccgGCGcACaCUGGCUCUCgGCCa -3'
miRNA:   3'- -GGUU---UGa---UGUaUG-GACCGAGGGaCGG- -5'
29521 5' -51.6 NC_006151.1 + 136746 0.66 0.984661
Target:  5'- gCCGAGCgucGCGcGCCUcGC-CCCgGCCa -3'
miRNA:   3'- -GGUUUGa--UGUaUGGAcCGaGGGaCGG- -5'
29521 5' -51.6 NC_006151.1 + 140435 0.72 0.837294
Target:  5'- -aGGAgUACGUGCCcGGCg-CCUGCCu -3'
miRNA:   3'- ggUUUgAUGUAUGGaCCGagGGACGG- -5'
29521 5' -51.6 NC_006151.1 + 142029 0.66 0.988019
Target:  5'- aCCAcguGGgUGCAUcugacccCCUGGUUCCCccGCCc -3'
miRNA:   3'- -GGU---UUgAUGUAu------GGACCGAGGGa-CGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.