Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29521 | 5' | -51.6 | NC_006151.1 | + | 142029 | 0.66 | 0.988019 |
Target: 5'- aCCAcguGGgUGCAUcugacccCCUGGUUCCCccGCCc -3' miRNA: 3'- -GGU---UUgAUGUAu------GGACCGAGGGa-CGG- -5' |
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29521 | 5' | -51.6 | NC_006151.1 | + | 140435 | 0.72 | 0.837294 |
Target: 5'- -aGGAgUACGUGCCcGGCg-CCUGCCu -3' miRNA: 3'- ggUUUgAUGUAUGGaCCGagGGACGG- -5' |
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29521 | 5' | -51.6 | NC_006151.1 | + | 136746 | 0.66 | 0.984661 |
Target: 5'- gCCGAGCgucGCGcGCCUcGC-CCCgGCCa -3' miRNA: 3'- -GGUUUGa--UGUaUGGAcCGaGGGaCGG- -5' |
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29521 | 5' | -51.6 | NC_006151.1 | + | 129140 | 0.69 | 0.928495 |
Target: 5'- gCCAAagaGCgccgGCGcACaCUGGCUCUCgGCCa -3' miRNA: 3'- -GGUU---UGa---UGUaUG-GACCGAGGGaCGG- -5' |
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29521 | 5' | -51.6 | NC_006151.1 | + | 120381 | 0.66 | 0.981915 |
Target: 5'- cCCGGACacggccguggACGUGCUcaacggcccgcugGGCUUCCUGCUg -3' miRNA: 3'- -GGUUUGa---------UGUAUGGa------------CCGAGGGACGG- -5' |
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29521 | 5' | -51.6 | NC_006151.1 | + | 120017 | 0.69 | 0.928495 |
Target: 5'- ---uGCUGCAggACCUGGCcCUgaGCCa -3' miRNA: 3'- gguuUGAUGUa-UGGACCGaGGgaCGG- -5' |
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29521 | 5' | -51.6 | NC_006151.1 | + | 118733 | 0.68 | 0.963833 |
Target: 5'- gCAcGGCUACGUGCUgggcccGGCggCCgUGCCa -3' miRNA: 3'- gGU-UUGAUGUAUGGa-----CCGa-GGgACGG- -5' |
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29521 | 5' | -51.6 | NC_006151.1 | + | 106988 | 0.66 | 0.988019 |
Target: 5'- -aGAAC-GCGUGCCUGGCgCCgCaGCUg -3' miRNA: 3'- ggUUUGaUGUAUGGACCGaGG-GaCGG- -5' |
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29521 | 5' | -51.6 | NC_006151.1 | + | 103026 | 0.66 | 0.982735 |
Target: 5'- aCGAGCgccuCGggGCCUGGUUCgCgCUGCUg -3' miRNA: 3'- gGUUUGau--GUa-UGGACCGAG-G-GACGG- -5' |
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29521 | 5' | -51.6 | NC_006151.1 | + | 101109 | 0.66 | 0.982735 |
Target: 5'- gUCGGGCgucuCGUGCCUGcGCUCCucccucuccuucCUGCg -3' miRNA: 3'- -GGUUUGau--GUAUGGAC-CGAGG------------GACGg -5' |
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29521 | 5' | -51.6 | NC_006151.1 | + | 100952 | 0.67 | 0.973175 |
Target: 5'- gCAAACgUGgGUGCCcguggaucGGCUCCUgGCCg -3' miRNA: 3'- gGUUUG-AUgUAUGGa-------CCGAGGGaCGG- -5' |
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29521 | 5' | -51.6 | NC_006151.1 | + | 98568 | 0.7 | 0.911091 |
Target: 5'- gCCGGGCUGCGcACCUcggccgaguucGGC-CCCgacGCCa -3' miRNA: 3'- -GGUUUGAUGUaUGGA-----------CCGaGGGa--CGG- -5' |
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29521 | 5' | -51.6 | NC_006151.1 | + | 87317 | 0.66 | 0.988019 |
Target: 5'- gCGcACgcCGUGCCgGcGCUCCCggGCCu -3' miRNA: 3'- gGUuUGauGUAUGGaC-CGAGGGa-CGG- -5' |
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29521 | 5' | -51.6 | NC_006151.1 | + | 86408 | 0.68 | 0.952427 |
Target: 5'- --cAACUACcUGCCcucGGCgUCCCUGUCc -3' miRNA: 3'- gguUUGAUGuAUGGa--CCG-AGGGACGG- -5' |
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29521 | 5' | -51.6 | NC_006151.1 | + | 85674 | 0.69 | 0.943608 |
Target: 5'- --cGACgGCA-ACCUGcGCUUCCUGCUg -3' miRNA: 3'- gguUUGaUGUaUGGAC-CGAGGGACGG- -5' |
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29521 | 5' | -51.6 | NC_006151.1 | + | 83419 | 0.68 | 0.963833 |
Target: 5'- aCCAggUUGCc-GCCggggGGCUCCCcggGCa -3' miRNA: 3'- -GGUuuGAUGuaUGGa---CCGAGGGa--CGg -5' |
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29521 | 5' | -51.6 | NC_006151.1 | + | 77500 | 0.68 | 0.960268 |
Target: 5'- gCC-AACUACGUGCgcacggagCUGGCgcgCCUcgGCCg -3' miRNA: 3'- -GGuUUGAUGUAUG--------GACCGa--GGGa-CGG- -5' |
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29521 | 5' | -51.6 | NC_006151.1 | + | 76216 | 0.66 | 0.98642 |
Target: 5'- -aGAugUGCGUGCCgucgaGGUUCUC-GCCc -3' miRNA: 3'- ggUUugAUGUAUGGa----CCGAGGGaCGG- -5' |
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29521 | 5' | -51.6 | NC_006151.1 | + | 69092 | 0.66 | 0.988019 |
Target: 5'- gCC-AGCUcgGCGUGCCgccgcaccaGCUCCC-GCCg -3' miRNA: 3'- -GGuUUGA--UGUAUGGac-------CGAGGGaCGG- -5' |
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29521 | 5' | -51.6 | NC_006151.1 | + | 68628 | 0.74 | 0.723712 |
Target: 5'- gCGAACUgcccgcGCGUcGCC-GGCUCCaCUGCCa -3' miRNA: 3'- gGUUUGA------UGUA-UGGaCCGAGG-GACGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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