miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29521 5' -51.6 NC_006151.1 + 39423 0.67 0.978343
Target:  5'- aCCAcguCUACGUccgcguccGCCUGGa-CCCgGCCg -3'
miRNA:   3'- -GGUuu-GAUGUA--------UGGACCgaGGGaCGG- -5'
29521 5' -51.6 NC_006151.1 + 28280 0.67 0.980632
Target:  5'- cCCGggGAC-GCGgGCCcGGCUCCCccauugGCCg -3'
miRNA:   3'- -GGU--UUGaUGUaUGGaCCGAGGGa-----CGG- -5'
29521 5' -51.6 NC_006151.1 + 28840 0.67 0.980632
Target:  5'- cCCGggGAC-GCGgGCCcGGCUCCCccauugGCCg -3'
miRNA:   3'- -GGU--UUGaUGUaUGGaCCGAGGGa-----CGG- -5'
29521 5' -51.6 NC_006151.1 + 60655 0.67 0.980632
Target:  5'- cCCGcGCcGCGU-CCUcGCUCCCgucGCCg -3'
miRNA:   3'- -GGUuUGaUGUAuGGAcCGAGGGa--CGG- -5'
29521 5' -51.6 NC_006151.1 + 3819 0.66 0.989469
Target:  5'- gCUGGACUugGUGCUggcggGGCUggagggCCCggaGCCg -3'
miRNA:   3'- -GGUUUGAugUAUGGa----CCGA------GGGa--CGG- -5'
29521 5' -51.6 NC_006151.1 + 18381 0.66 0.989469
Target:  5'- uCCAGGCUcACGUAC--GGC-CCCUcguaGCCg -3'
miRNA:   3'- -GGUUUGA-UGUAUGgaCCGaGGGA----CGG- -5'
29521 5' -51.6 NC_006151.1 + 106988 0.66 0.988019
Target:  5'- -aGAAC-GCGUGCCUGGCgCCgCaGCUg -3'
miRNA:   3'- ggUUUGaUGUAUGGACCGaGG-GaCGG- -5'
29521 5' -51.6 NC_006151.1 + 54651 0.66 0.988019
Target:  5'- gCGAgcGCUGCGUggacgagcacgACCUGGCcgggCaCCUGCg -3'
miRNA:   3'- gGUU--UGAUGUA-----------UGGACCGa---G-GGACGg -5'
29521 5' -51.6 NC_006151.1 + 142029 0.66 0.988019
Target:  5'- aCCAcguGGgUGCAUcugacccCCUGGUUCCCccGCCc -3'
miRNA:   3'- -GGU---UUgAUGUAu------GGACCGAGGGa-CGG- -5'
29521 5' -51.6 NC_006151.1 + 87317 0.66 0.988019
Target:  5'- gCGcACgcCGUGCCgGcGCUCCCggGCCu -3'
miRNA:   3'- gGUuUGauGUAUGGaC-CGAGGGa-CGG- -5'
29521 5' -51.6 NC_006151.1 + 69092 0.66 0.988019
Target:  5'- gCC-AGCUcgGCGUGCCgccgcaccaGCUCCC-GCCg -3'
miRNA:   3'- -GGuUUGA--UGUAUGGac-------CGAGGGaCGG- -5'
29521 5' -51.6 NC_006151.1 + 76216 0.66 0.98642
Target:  5'- -aGAugUGCGUGCCgucgaGGUUCUC-GCCc -3'
miRNA:   3'- ggUUugAUGUAUGGa----CCGAGGGaCGG- -5'
29521 5' -51.6 NC_006151.1 + 136746 0.66 0.984661
Target:  5'- gCCGAGCgucGCGcGCCUcGC-CCCgGCCa -3'
miRNA:   3'- -GGUUUGa--UGUaUGGAcCGaGGGaCGG- -5'
29521 5' -51.6 NC_006151.1 + 103026 0.66 0.982735
Target:  5'- aCGAGCgccuCGggGCCUGGUUCgCgCUGCUg -3'
miRNA:   3'- gGUUUGau--GUa-UGGACCGAG-G-GACGG- -5'
29521 5' -51.6 NC_006151.1 + 101109 0.66 0.982735
Target:  5'- gUCGGGCgucuCGUGCCUGcGCUCCucccucuccuucCUGCg -3'
miRNA:   3'- -GGUUUGau--GUAUGGAC-CGAGG------------GACGg -5'
29521 5' -51.6 NC_006151.1 + 120381 0.66 0.981915
Target:  5'- cCCGGACacggccguggACGUGCUcaacggcccgcugGGCUUCCUGCUg -3'
miRNA:   3'- -GGUUUGa---------UGUAUGGa------------CCGAGGGACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.