miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29522 5' -57.9 NC_006151.1 + 117123 0.66 0.816768
Target:  5'- gGCCCgccucacgGGGcggcGGCGGGCCGCGucgggGCg- -3'
miRNA:   3'- -UGGGa-------UCUu---CCGCUCGGCGCua---CGac -5'
29522 5' -57.9 NC_006151.1 + 36681 0.66 0.799132
Target:  5'- aGCgCCUGGAccuGGCcgcGGCgGCGGUGCUc -3'
miRNA:   3'- -UG-GGAUCUu--CCGc--UCGgCGCUACGAc -5'
29522 5' -57.9 NC_006151.1 + 26207 0.66 0.799132
Target:  5'- gGCCC--GAGGcGCGGGCCGCGcgcgGCc- -3'
miRNA:   3'- -UGGGauCUUC-CGCUCGGCGCua--CGac -5'
29522 5' -57.9 NC_006151.1 + 14931 0.66 0.798234
Target:  5'- aGCCCgAGGccacGGCGGGCCcgccggcGCGGUGCc- -3'
miRNA:   3'- -UGGGaUCUu---CCGCUCGG-------CGCUACGac -5'
29522 5' -57.9 NC_006151.1 + 25374 0.66 0.790083
Target:  5'- gACgCCgaucGAGGCGcugcGCCGCGAccUGCUGg -3'
miRNA:   3'- -UG-GGauc-UUCCGCu---CGGCGCU--ACGAC- -5'
29522 5' -57.9 NC_006151.1 + 36865 0.66 0.790083
Target:  5'- cGCCCUGcagccGGAGGCGAacGCCGCGuacgacGCc- -3'
miRNA:   3'- -UGGGAU-----CUUCCGCU--CGGCGCua----CGac -5'
29522 5' -57.9 NC_006151.1 + 53748 0.66 0.790083
Target:  5'- aACCC--GgcGGCGccggccgcGGCCGCGGUGgUGg -3'
miRNA:   3'- -UGGGauCuuCCGC--------UCGGCGCUACgAC- -5'
29522 5' -57.9 NC_006151.1 + 118836 0.66 0.790083
Target:  5'- uCCCgugcAGGuAGGCGAGCCcGCGGaGCa- -3'
miRNA:   3'- uGGGa---UCU-UCCGCUCGG-CGCUaCGac -5'
29522 5' -57.9 NC_006151.1 + 53202 0.66 0.780892
Target:  5'- aGCCCgcggcgaAGAcGGCGGcGCCGaCGA-GCUGg -3'
miRNA:   3'- -UGGGa------UCUuCCGCU-CGGC-GCUaCGAC- -5'
29522 5' -57.9 NC_006151.1 + 62104 0.66 0.778108
Target:  5'- cGCCCgGGGccccggcgggcgccAGcGCGAGCCGCGccGCg- -3'
miRNA:   3'- -UGGGaUCU--------------UC-CGCUCGGCGCuaCGac -5'
29522 5' -57.9 NC_006151.1 + 17334 0.67 0.771567
Target:  5'- cCCCUucGGGGCGcucgccaucgGGCUGCuGGUGCUGg -3'
miRNA:   3'- uGGGAucUUCCGC----------UCGGCG-CUACGAC- -5'
29522 5' -57.9 NC_006151.1 + 33517 0.67 0.771567
Target:  5'- cCCCUGGgcGGCcucGGCCGCGu--CUGg -3'
miRNA:   3'- uGGGAUCuuCCGc--UCGGCGCuacGAC- -5'
29522 5' -57.9 NC_006151.1 + 22150 0.67 0.762118
Target:  5'- gGCgCUGGAgcguggAGGCG-GCCGcCGA-GCUGg -3'
miRNA:   3'- -UGgGAUCU------UCCGCuCGGC-GCUaCGAC- -5'
29522 5' -57.9 NC_006151.1 + 61044 0.67 0.762118
Target:  5'- gGCCCcgAGAGGcGCGGGCgcucgCGCGGgcGCUGc -3'
miRNA:   3'- -UGGGa-UCUUC-CGCUCG-----GCGCUa-CGAC- -5'
29522 5' -57.9 NC_006151.1 + 90867 0.67 0.75926
Target:  5'- cGCCCUGcgcguggacGAAGGCGucgucgcgcaggacGGCCGCGAagGCc- -3'
miRNA:   3'- -UGGGAU---------CUUCCGC--------------UCGGCGCUa-CGac -5'
29522 5' -57.9 NC_006151.1 + 87172 0.67 0.752553
Target:  5'- uGCCCcgcggcGGAGGCGGacGCCGCGcgGUGcCUGa -3'
miRNA:   3'- -UGGGau----CUUCCGCU--CGGCGC--UAC-GAC- -5'
29522 5' -57.9 NC_006151.1 + 21086 0.67 0.752553
Target:  5'- gGCUCgacGAGGCGcGCCGCGGgcgcgcGCUGg -3'
miRNA:   3'- -UGGGaucUUCCGCuCGGCGCUa-----CGAC- -5'
29522 5' -57.9 NC_006151.1 + 11716 0.67 0.752553
Target:  5'- gGCCCgGGcGAGGCGAccGUCGCGGUcGCg- -3'
miRNA:   3'- -UGGGaUC-UUCCGCU--CGGCGCUA-CGac -5'
29522 5' -57.9 NC_006151.1 + 19691 0.67 0.752553
Target:  5'- gGCCCc-GggGGCaucGGCCcgggcaccacgGCGGUGCUGg -3'
miRNA:   3'- -UGGGauCuuCCGc--UCGG-----------CGCUACGAC- -5'
29522 5' -57.9 NC_006151.1 + 91077 0.67 0.749663
Target:  5'- gGCCCgcGggGGCGGcgggcgccGCCGCGcccgagaagucaaaGUGCUc -3'
miRNA:   3'- -UGGGauCuuCCGCU--------CGGCGC--------------UACGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.