miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29522 5' -57.9 NC_006151.1 + 126362 0.69 0.601427
Target:  5'- cGCCCgucGGGGCGccgggggcuccGGCgGCGGUGCUGc -3'
miRNA:   3'- -UGGGaucUUCCGC-----------UCGgCGCUACGAC- -5'
29522 5' -57.9 NC_006151.1 + 123756 0.7 0.588182
Target:  5'- uCCCUcaGGGAGGCGAGggccgagccgaagcCCGCGcgGCg- -3'
miRNA:   3'- uGGGA--UCUUCCGCUC--------------GGCGCuaCGac -5'
29522 5' -57.9 NC_006151.1 + 123346 0.69 0.632113
Target:  5'- cGCCCcggcgacggggcUGGggGGCGGgcGCCGCGGggGCg- -3'
miRNA:   3'- -UGGG------------AUCuuCCGCU--CGGCGCUa-CGac -5'
29522 5' -57.9 NC_006151.1 + 118836 0.66 0.790083
Target:  5'- uCCCgugcAGGuAGGCGAGCCcGCGGaGCa- -3'
miRNA:   3'- uGGGa---UCU-UCCGCUCGG-CGCUaCGac -5'
29522 5' -57.9 NC_006151.1 + 117123 0.66 0.816768
Target:  5'- gGCCCgccucacgGGGcggcGGCGGGCCGCGucgggGCg- -3'
miRNA:   3'- -UGGGa-------UCUu---CCGCUCGGCGCua---CGac -5'
29522 5' -57.9 NC_006151.1 + 107276 0.7 0.581071
Target:  5'- aGCCCcgccgGGGcucGGGCGAGaUCGUGGUGCUa -3'
miRNA:   3'- -UGGGa----UCU---UCCGCUC-GGCGCUACGAc -5'
29522 5' -57.9 NC_006151.1 + 105386 0.71 0.491985
Target:  5'- uGCCUcgAGGAGGUGAcgGCCGCGcUGCUc -3'
miRNA:   3'- -UGGGa-UCUUCCGCU--CGGCGCuACGAc -5'
29522 5' -57.9 NC_006151.1 + 94302 0.74 0.376006
Target:  5'- -gCCUGGAggccuGGGCGcGCCGCGGggUGCUGc -3'
miRNA:   3'- ugGGAUCU-----UCCGCuCGGCGCU--ACGAC- -5'
29522 5' -57.9 NC_006151.1 + 91077 0.67 0.749663
Target:  5'- gGCCCgcGggGGCGGcgggcgccGCCGCGcccgagaagucaaaGUGCUc -3'
miRNA:   3'- -UGGGauCuuCCGCU--------CGGCGC--------------UACGAc -5'
29522 5' -57.9 NC_006151.1 + 90867 0.67 0.75926
Target:  5'- cGCCCUGcgcguggacGAAGGCGucgucgcgcaggacGGCCGCGAagGCc- -3'
miRNA:   3'- -UGGGAU---------CUUCCGC--------------UCGGCGCUa-CGac -5'
29522 5' -57.9 NC_006151.1 + 87172 0.67 0.752553
Target:  5'- uGCCCcgcggcGGAGGCGGacGCCGCGcgGUGcCUGa -3'
miRNA:   3'- -UGGGau----CUUCCGCU--CGGCGC--UAC-GAC- -5'
29522 5' -57.9 NC_006151.1 + 81712 0.7 0.540849
Target:  5'- cGCCCUguacgcGGucGcGgGGGCCGUGGUGCUGc -3'
miRNA:   3'- -UGGGA------UCuuC-CgCUCGGCGCUACGAC- -5'
29522 5' -57.9 NC_006151.1 + 78297 0.67 0.739962
Target:  5'- cGCCUUgcggcgcgcgaggcGGAAGcGCGGGuCCGCGAgcgcGCUGc -3'
miRNA:   3'- -UGGGA--------------UCUUC-CGCUC-GGCGCUa---CGAC- -5'
29522 5' -57.9 NC_006151.1 + 69891 0.68 0.683144
Target:  5'- gUCCUGGcgcaccaccgucAGGGCGaAGCCGgGGUGCa- -3'
miRNA:   3'- uGGGAUC------------UUCCGC-UCGGCgCUACGac -5'
29522 5' -57.9 NC_006151.1 + 65337 0.67 0.723259
Target:  5'- cAUCCUGc--GGCGGGCCGCGG-GCg- -3'
miRNA:   3'- -UGGGAUcuuCCGCUCGGCGCUaCGac -5'
29522 5' -57.9 NC_006151.1 + 62104 0.66 0.778108
Target:  5'- cGCCCgGGGccccggcgggcgccAGcGCGAGCCGCGccGCg- -3'
miRNA:   3'- -UGGGaUCU--------------UC-CGCUCGGCGCuaCGac -5'
29522 5' -57.9 NC_006151.1 + 61044 0.67 0.762118
Target:  5'- gGCCCcgAGAGGcGCGGGCgcucgCGCGGgcGCUGc -3'
miRNA:   3'- -UGGGa-UCUUC-CGCUCG-----GCGCUa-CGAC- -5'
29522 5' -57.9 NC_006151.1 + 53915 0.68 0.672987
Target:  5'- cGCCgaGGccGGUGgaGGCCGCGAgGCUGa -3'
miRNA:   3'- -UGGgaUCuuCCGC--UCGGCGCUaCGAC- -5'
29522 5' -57.9 NC_006151.1 + 53748 0.66 0.790083
Target:  5'- aACCC--GgcGGCGccggccgcGGCCGCGGUGgUGg -3'
miRNA:   3'- -UGGGauCuuCCGC--------UCGGCGCUACgAC- -5'
29522 5' -57.9 NC_006151.1 + 53202 0.66 0.780892
Target:  5'- aGCCCgcggcgaAGAcGGCGGcGCCGaCGA-GCUGg -3'
miRNA:   3'- -UGGGa------UCUuCCGCU-CGGC-GCUaCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.