miRNA display CGI


Results 41 - 60 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29523 3' -55.5 NC_006151.1 + 105063 0.69 0.775379
Target:  5'- gGCGGGCGcccccuccgGCCUCCccgGCucCGGGCCCu -3'
miRNA:   3'- -CGUCUGUa--------CGGAGG---UGuuGCUCGGGc -5'
29523 3' -55.5 NC_006151.1 + 20947 0.69 0.806519
Target:  5'- cGCGGAC--GCgCUCCugGACGcgcacgacguguuccGGCCCGc -3'
miRNA:   3'- -CGUCUGuaCG-GAGGugUUGC---------------UCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 38882 0.69 0.775379
Target:  5'- cGCGGACGUGCUgcaggCCGgCGGC-AGCCgCGg -3'
miRNA:   3'- -CGUCUGUACGGa----GGU-GUUGcUCGG-GC- -5'
29523 3' -55.5 NC_006151.1 + 97919 0.69 0.765919
Target:  5'- -aGGGCccGCUUcCCACGACGGcgcGCCCGg -3'
miRNA:   3'- cgUCUGuaCGGA-GGUGUUGCU---CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 71080 0.69 0.765919
Target:  5'- cGCAGcgucGCGUGCCgCCGCAGCGucUCCa -3'
miRNA:   3'- -CGUC----UGUACGGaGGUGUUGCucGGGc -5'
29523 3' -55.5 NC_006151.1 + 89493 0.69 0.802945
Target:  5'- aGCGGcgGCGgcGCCUCCGCGggcgucgcgGCGAGCUCc -3'
miRNA:   3'- -CGUC--UGUa-CGGAGGUGU---------UGCUCGGGc -5'
29523 3' -55.5 NC_006151.1 + 82504 0.69 0.78471
Target:  5'- cGUGGACAUGaCCUCgucgACGACGAGCaCGu -3'
miRNA:   3'- -CGUCUGUAC-GGAGg---UGUUGCUCGgGC- -5'
29523 3' -55.5 NC_006151.1 + 138397 0.69 0.790242
Target:  5'- gGCGGAgGagGCCgagggccgcggggCCGCGGCGGGCgCCGg -3'
miRNA:   3'- -CGUCUgUa-CGGa------------GGUGUUGCUCG-GGC- -5'
29523 3' -55.5 NC_006151.1 + 7543 0.69 0.793901
Target:  5'- gGCGGuCGUGCgCgcgcucugCCGCGGgGAGCCCc -3'
miRNA:   3'- -CGUCuGUACG-Ga-------GGUGUUgCUCGGGc -5'
29523 3' -55.5 NC_006151.1 + 141794 0.69 0.78471
Target:  5'- -gGGACGauCCUCCGCcgcCGAGCCCu -3'
miRNA:   3'- cgUCUGUacGGAGGUGuu-GCUCGGGc -5'
29523 3' -55.5 NC_006151.1 + 24909 0.69 0.765919
Target:  5'- cGCGGGCAcgGUgUCCAuCAACGGGCaCGa -3'
miRNA:   3'- -CGUCUGUa-CGgAGGU-GUUGCUCGgGC- -5'
29523 3' -55.5 NC_006151.1 + 64148 0.69 0.775379
Target:  5'- -gGGACggGCCUCCcCGGCGGGacggCCGg -3'
miRNA:   3'- cgUCUGuaCGGAGGuGUUGCUCg---GGC- -5'
29523 3' -55.5 NC_006151.1 + 92289 0.69 0.78471
Target:  5'- uGguGACGUGCagggcccgCUCCACGACGAgggugGCCa- -3'
miRNA:   3'- -CguCUGUACG--------GAGGUGUUGCU-----CGGgc -5'
29523 3' -55.5 NC_006151.1 + 22174 0.69 0.793901
Target:  5'- aCGGGCGcgugGCCgaCCGCGACGGGCgCUGg -3'
miRNA:   3'- cGUCUGUa---CGGa-GGUGUUGCUCG-GGC- -5'
29523 3' -55.5 NC_006151.1 + 55336 0.69 0.756338
Target:  5'- aGCGGGCggGCgCUCCGCAcguUGAGCaggCCGg -3'
miRNA:   3'- -CGUCUGuaCG-GAGGUGUu--GCUCG---GGC- -5'
29523 3' -55.5 NC_006151.1 + 111492 0.68 0.8291
Target:  5'- cGCgGGACGUGCCcgCCGCcuGgGAGCCgGc -3'
miRNA:   3'- -CG-UCUGUACGGa-GGUGu-UgCUCGGgC- -5'
29523 3' -55.5 NC_006151.1 + 26459 0.68 0.8291
Target:  5'- cGCAGcacCAcGCgCUCCcCcGCGGGCCCGg -3'
miRNA:   3'- -CGUCu--GUaCG-GAGGuGuUGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 57380 0.68 0.8291
Target:  5'- cGCGcGCGcGCCgccgCCGcCAugGGGCCCGu -3'
miRNA:   3'- -CGUcUGUaCGGa---GGU-GUugCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 41882 0.68 0.8291
Target:  5'- cGCGGGCuacGCCgCCA--GCGAGCuCCGg -3'
miRNA:   3'- -CGUCUGua-CGGaGGUguUGCUCG-GGC- -5'
29523 3' -55.5 NC_006151.1 + 17571 0.68 0.837466
Target:  5'- cGCcGACAcggGCCUCCuggacuACAGCGAGaUCCa -3'
miRNA:   3'- -CGuCUGUa--CGGAGG------UGUUGCUC-GGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.