miRNA display CGI


Results 41 - 60 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29523 3' -55.5 NC_006151.1 + 29142 0.68 0.845643
Target:  5'- uGCGcGACGgggGCCUgCGCGACGuGCgCGu -3'
miRNA:   3'- -CGU-CUGUa--CGGAgGUGUUGCuCGgGC- -5'
29523 3' -55.5 NC_006151.1 + 29939 0.73 0.550471
Target:  5'- gGCGGACGcgcGCUUCCugGcgcugaugcgcgccGCGGGCCCGc -3'
miRNA:   3'- -CGUCUGUa--CGGAGGugU--------------UGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 30488 0.67 0.876319
Target:  5'- gGCGGACGcGCgCgcgCCGC--CGAGCCUGg -3'
miRNA:   3'- -CGUCUGUaCG-Ga--GGUGuuGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 30874 0.66 0.921358
Target:  5'- cGCGGGCuucguggagGCCgccgcggcgCCGCuggcgcugGACGAGCCCu -3'
miRNA:   3'- -CGUCUGua-------CGGa--------GGUG--------UUGCUCGGGc -5'
29523 3' -55.5 NC_006151.1 + 32183 0.67 0.890353
Target:  5'- cGCGGGCGggggguacgcgGCCUggcCCACGaacgcggcggccGCGuGCCCGg -3'
miRNA:   3'- -CGUCUGUa----------CGGA---GGUGU------------UGCuCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 32499 0.7 0.716996
Target:  5'- gGCGGGCGU-CCUCCACGaucGCGuGCgCCu -3'
miRNA:   3'- -CGUCUGUAcGGAGGUGU---UGCuCG-GGc -5'
29523 3' -55.5 NC_006151.1 + 34226 0.66 0.90092
Target:  5'- cGCAGACccagccgccgcgGUCUCCGCuGGCG-GCCCc -3'
miRNA:   3'- -CGUCUGua----------CGGAGGUG-UUGCuCGGGc -5'
29523 3' -55.5 NC_006151.1 + 37093 0.67 0.868967
Target:  5'- cGCGGGCGcGCgC-CCGCcGCGGcGCCCGc -3'
miRNA:   3'- -CGUCUGUaCG-GaGGUGuUGCU-CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 37333 0.67 0.876319
Target:  5'- cGCGGcCGUGCUggCCACGACGcuCUCGc -3'
miRNA:   3'- -CGUCuGUACGGa-GGUGUUGCucGGGC- -5'
29523 3' -55.5 NC_006151.1 + 38550 0.66 0.915635
Target:  5'- gGCGGcgGCGcGCgaCCGCGACGgGGCCCu -3'
miRNA:   3'- -CGUC--UGUaCGgaGGUGUUGC-UCGGGc -5'
29523 3' -55.5 NC_006151.1 + 38882 0.69 0.775379
Target:  5'- cGCGGACGUGCUgcaggCCGgCGGC-AGCCgCGg -3'
miRNA:   3'- -CGUCUGUACGGa----GGU-GUUGcUCGG-GC- -5'
29523 3' -55.5 NC_006151.1 + 39153 0.66 0.921358
Target:  5'- gGCuGACGUGgCUCgACGacuacgccgucGCGGcGCCCGu -3'
miRNA:   3'- -CGuCUGUACgGAGgUGU-----------UGCU-CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 39199 0.66 0.915635
Target:  5'- -gAGAac-GCCggcgCgGCGGCGGGCCCGc -3'
miRNA:   3'- cgUCUguaCGGa---GgUGUUGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 41483 0.67 0.883449
Target:  5'- gGCGGGCG-GCCgucgcgcaaguUCCGCccgcgcacccGCGAGCCCa -3'
miRNA:   3'- -CGUCUGUaCGG-----------AGGUGu---------UGCUCGGGc -5'
29523 3' -55.5 NC_006151.1 + 41882 0.68 0.8291
Target:  5'- cGCGGGCuacGCCgCCA--GCGAGCuCCGg -3'
miRNA:   3'- -CGUCUGua-CGGaGGUguUGCUCG-GGC- -5'
29523 3' -55.5 NC_006151.1 + 42221 0.67 0.868967
Target:  5'- cGgGGGCAUGUgcgCCAuCAGCGAGCUCc -3'
miRNA:   3'- -CgUCUGUACGga-GGU-GUUGCUCGGGc -5'
29523 3' -55.5 NC_006151.1 + 42266 0.68 0.84321
Target:  5'- cGUGGACgcGUGCCUgCGCGagggccaggcguggACGGGgCCCGg -3'
miRNA:   3'- -CGUCUG--UACGGAgGUGU--------------UGCUC-GGGC- -5'
29523 3' -55.5 NC_006151.1 + 42531 0.72 0.583969
Target:  5'- cGCGGGCGUGCC-CCugcucgcgcaaACGugGGuGCCCGu -3'
miRNA:   3'- -CGUCUGUACGGaGG-----------UGUugCU-CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 42574 0.67 0.876319
Target:  5'- -uGGAgGUGCUgcgCCGCGGCGcgcgcgcGCCCGa -3'
miRNA:   3'- cgUCUgUACGGa--GGUGUUGCu------CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 43174 0.73 0.53344
Target:  5'- cGCGGGCGcacgGCCUCCGuCuuCGcGCCCGg -3'
miRNA:   3'- -CGUCUGUa---CGGAGGU-GuuGCuCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.