miRNA display CGI


Results 21 - 40 of 167 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29523 3' -55.5 NC_006151.1 + 18086 0.67 0.853623
Target:  5'- --cGACAUGCUgggCCGCAucGCGGccGCCUGg -3'
miRNA:   3'- cguCUGUACGGa--GGUGU--UGCU--CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 18257 0.66 0.921358
Target:  5'- cGUGGGCcccgcgGCCcCCGCGGCcgcccgucGGGCCCGg -3'
miRNA:   3'- -CGUCUGua----CGGaGGUGUUG--------CUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 18397 0.66 0.915635
Target:  5'- aGCAcGcACGUGCUggCCgGCGACaGGCCCGa -3'
miRNA:   3'- -CGU-C-UGUACGGa-GG-UGUUGcUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 19034 0.66 0.903468
Target:  5'- aGguGACc-GCCUucgaCCGCGACGAGaacCCCGu -3'
miRNA:   3'- -CguCUGuaCGGA----GGUGUUGCUC---GGGC- -5'
29523 3' -55.5 NC_006151.1 + 19535 0.66 0.897027
Target:  5'- cGCGGGCc-GCCUCgGCcucgcCGAcGCCCGg -3'
miRNA:   3'- -CGUCUGuaCGGAGgUGuu---GCU-CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 20366 0.77 0.360914
Target:  5'- cGCGGACc-GCCUCUcgcggcgcucgGCGGCGAGCCUGg -3'
miRNA:   3'- -CGUCUGuaCGGAGG-----------UGUUGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 20420 0.71 0.675453
Target:  5'- gGCGGACcUGCCggCCGCGGCgcugcgcgacgccGAGCgCCGg -3'
miRNA:   3'- -CGUCUGuACGGa-GGUGUUG-------------CUCG-GGC- -5'
29523 3' -55.5 NC_006151.1 + 20495 0.66 0.895711
Target:  5'- cGCGGACGccggcgacggggGCgUCgGCGACGAagacggGCCCGg -3'
miRNA:   3'- -CGUCUGUa-----------CGgAGgUGUUGCU------CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 20678 0.66 0.915635
Target:  5'- cGUGGGCGgcugcgcgGCCUCgCcCGACGAGCgCCu -3'
miRNA:   3'- -CGUCUGUa-------CGGAG-GuGUUGCUCG-GGc -5'
29523 3' -55.5 NC_006151.1 + 20947 0.69 0.806519
Target:  5'- cGCGGAC--GCgCUCCugGACGcgcacgacguguuccGGCCCGc -3'
miRNA:   3'- -CGUCUGuaCG-GAGGugUUGC---------------UCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 21016 0.68 0.837466
Target:  5'- gGCGGAgGcgGCgUCCACGgcggcgGCGGGCgCCGa -3'
miRNA:   3'- -CGUCUgUa-CGgAGGUGU------UGCUCG-GGC- -5'
29523 3' -55.5 NC_006151.1 + 21468 0.66 0.897027
Target:  5'- gGCGGcGCGUGCCgcuUCCACGcgcGCGucgcGCUCGa -3'
miRNA:   3'- -CGUC-UGUACGG---AGGUGU---UGCu---CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 22174 0.69 0.793901
Target:  5'- aCGGGCGcgugGCCgaCCGCGACGGGCgCUGg -3'
miRNA:   3'- cGUCUGUa---CGGa-GGUGUUGCUCG-GGC- -5'
29523 3' -55.5 NC_006151.1 + 23414 0.66 0.897027
Target:  5'- --cGGCGUG-CUCCACGGgcAGCCCGu -3'
miRNA:   3'- cguCUGUACgGAGGUGUUgcUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 24411 0.7 0.706953
Target:  5'- gGCGGcgccGCGgccGCCUCCGCGgGCGcGCCCGu -3'
miRNA:   3'- -CGUC----UGUa--CGGAGGUGU-UGCuCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 24909 0.69 0.765919
Target:  5'- cGCGGGCAcgGUgUCCAuCAACGGGCaCGa -3'
miRNA:   3'- -CGUCUGUa-CGgAGGU-GUUGCUCGgGC- -5'
29523 3' -55.5 NC_006151.1 + 26241 0.71 0.666232
Target:  5'- cGCGGcgucgacgacGCGcGCgUCCACGucgGCGGGCCCGa -3'
miRNA:   3'- -CGUC----------UGUaCGgAGGUGU---UGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 26459 0.68 0.8291
Target:  5'- cGCAGcacCAcGCgCUCCcCcGCGGGCCCGg -3'
miRNA:   3'- -CGUCu--GUaCG-GAGGuGuUGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 27334 0.68 0.845643
Target:  5'- uCGGGCA-GCaCgaagCCGC-GCGAGCCCGc -3'
miRNA:   3'- cGUCUGUaCG-Ga---GGUGuUGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 27523 0.66 0.915635
Target:  5'- cGCAGGCccGCCgggCGCG-CGAGCgCGa -3'
miRNA:   3'- -CGUCUGuaCGGag-GUGUuGCUCGgGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.