miRNA display CGI


Results 21 - 40 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29523 3' -55.5 NC_006151.1 + 120417 0.74 0.50387
Target:  5'- aGCGGGCGg----CCGCGGCGAGCCCa -3'
miRNA:   3'- -CGUCUGUacggaGGUGUUGCUCGGGc -5'
29523 3' -55.5 NC_006151.1 + 119474 0.68 0.845643
Target:  5'- --cGACgGUGCggaCCACGAgGAGCCCGa -3'
miRNA:   3'- cguCUG-UACGga-GGUGUUgCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 118986 0.66 0.915635
Target:  5'- cGgGGGCGUugGUCUCgAugguccCGGCGAGCCCGu -3'
miRNA:   3'- -CgUCUGUA--CGGAGgU------GUUGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 118642 0.72 0.583969
Target:  5'- aGCAG-CAUGcCCUCCAuCAGCGucgagggcuucuGGCCCa -3'
miRNA:   3'- -CGUCuGUAC-GGAGGU-GUUGC------------UCGGGc -5'
29523 3' -55.5 NC_006151.1 + 117128 0.66 0.903468
Target:  5'- gGCgAGGCccGCCUCacggggcgGCGGCGGGCCgCGu -3'
miRNA:   3'- -CG-UCUGuaCGGAGg-------UGUUGCUCGG-GC- -5'
29523 3' -55.5 NC_006151.1 + 115220 0.67 0.852043
Target:  5'- gGCcGACGggcccauuggccgggGCCUCaCACGugggccccggggacGCGGGCCCGg -3'
miRNA:   3'- -CGuCUGUa--------------CGGAG-GUGU--------------UGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 111842 0.67 0.890353
Target:  5'- gGCGGGgAUGCCgcgCCGgcACGAGCgCa -3'
miRNA:   3'- -CGUCUgUACGGa--GGUguUGCUCGgGc -5'
29523 3' -55.5 NC_006151.1 + 111710 0.67 0.890353
Target:  5'- cGgGGACGcGCCUgCgGCGGCGGGCgCGc -3'
miRNA:   3'- -CgUCUGUaCGGA-GgUGUUGCUCGgGC- -5'
29523 3' -55.5 NC_006151.1 + 111492 0.68 0.8291
Target:  5'- cGCgGGACGUGCCcgCCGCcuGgGAGCCgGc -3'
miRNA:   3'- -CG-UCUGUACGGa-GGUGu-UgCUCGGgC- -5'
29523 3' -55.5 NC_006151.1 + 108262 0.7 0.746646
Target:  5'- cGCGGGagacGCCUCCGCG-CGcccauuGGCCCGg -3'
miRNA:   3'- -CGUCUgua-CGGAGGUGUuGC------UCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 106769 0.67 0.883449
Target:  5'- aGCAccGCGaGCC-CCugcuCGACGAGCCCGc -3'
miRNA:   3'- -CGUc-UGUaCGGaGGu---GUUGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 106004 0.66 0.921358
Target:  5'- cCAGGCcgcgGCCcgcuaccgcgCCGCGGcCGGGCCCGu -3'
miRNA:   3'- cGUCUGua--CGGa---------GGUGUU-GCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 105639 0.68 0.811831
Target:  5'- uGCAGA---GCCUCCGC--CGGGCCUa -3'
miRNA:   3'- -CGUCUguaCGGAGGUGuuGCUCGGGc -5'
29523 3' -55.5 NC_006151.1 + 105376 0.67 0.865966
Target:  5'- aGguGACG-GCCgcgcugcucgcgcUCCGCGACGcgauccccggggccGGCCCGg -3'
miRNA:   3'- -CguCUGUaCGG-------------AGGUGUUGC--------------UCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 105063 0.69 0.775379
Target:  5'- gGCGGGCGcccccuccgGCCUCCccgGCucCGGGCCCu -3'
miRNA:   3'- -CGUCUGUa--------CGGAGG---UGuuGCUCGGGc -5'
29523 3' -55.5 NC_006151.1 + 103963 0.71 0.645667
Target:  5'- cGCGGcCGUGCuggacucuagCUCCAUcgUGGGCCCGg -3'
miRNA:   3'- -CGUCuGUACG----------GAGGUGuuGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 103315 0.66 0.909671
Target:  5'- gGCGacGGCcgGCC-CCGCGGCccgcucGGGCCCa -3'
miRNA:   3'- -CGU--CUGuaCGGaGGUGUUG------CUCGGGc -5'
29523 3' -55.5 NC_006151.1 + 103022 0.71 0.655959
Target:  5'- gGCGGcGCuUGCCUCCcCGGCGccugccuccccGGCCCGg -3'
miRNA:   3'- -CGUC-UGuACGGAGGuGUUGC-----------UCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 101889 0.66 0.897027
Target:  5'- gGCAGGCucggcgcgccgAUGCgaUCCGCG--GAGCCCGc -3'
miRNA:   3'- -CGUCUG-----------UACGg-AGGUGUugCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 97919 0.69 0.765919
Target:  5'- -aGGGCccGCUUcCCACGACGGcgcGCCCGg -3'
miRNA:   3'- cgUCUGuaCGGA-GGUGUUGCU---CGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.