miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29523 3' -55.5 NC_006151.1 + 142732 0.76 0.377193
Target:  5'- cGCGGGCGgggGCUUCCGCuccGCGGcGCCCGc -3'
miRNA:   3'- -CGUCUGUa--CGGAGGUGu--UGCU-CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 141794 0.69 0.78471
Target:  5'- -gGGACGauCCUCCGCcgcCGAGCCCu -3'
miRNA:   3'- cgUCUGUacGGAGGUGuu-GCUCGGGc -5'
29523 3' -55.5 NC_006151.1 + 141381 0.75 0.456271
Target:  5'- -gAGAUG-GCCUCCACcuuGAUGGGCCCGa -3'
miRNA:   3'- cgUCUGUaCGGAGGUG---UUGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 141259 0.73 0.553494
Target:  5'- cGCGGGCcgguggGUCUCCACGGCGccCCCGg -3'
miRNA:   3'- -CGUCUGua----CGGAGGUGUUGCucGGGC- -5'
29523 3' -55.5 NC_006151.1 + 140757 0.73 0.53344
Target:  5'- uGCAGGCGggcgaaggagGCCUCCACGcgggcgaagcagGcCGGGCCCa -3'
miRNA:   3'- -CGUCUGUa---------CGGAGGUGU------------U-GCUCGGGc -5'
29523 3' -55.5 NC_006151.1 + 140615 0.66 0.909671
Target:  5'- cGUAGACGUGguaguCCcCCACGGCcGGGCCg- -3'
miRNA:   3'- -CGUCUGUAC-----GGaGGUGUUG-CUCGGgc -5'
29523 3' -55.5 NC_006151.1 + 139930 0.67 0.8614
Target:  5'- aGCAGcGCGggaGCggggUCCGgAGCGGGCCCGa -3'
miRNA:   3'- -CGUC-UGUa--CGg---AGGUgUUGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 139529 0.67 0.890353
Target:  5'- cGgGGGCAgGCCgggCGCGggcuccGCGGGCCCGg -3'
miRNA:   3'- -CgUCUGUaCGGag-GUGU------UGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 139425 0.67 0.853623
Target:  5'- cCAGGCG-GCCU-CGCGggcGCGGGCCCc -3'
miRNA:   3'- cGUCUGUaCGGAgGUGU---UGCUCGGGc -5'
29523 3' -55.5 NC_006151.1 + 139281 0.67 0.868967
Target:  5'- cGCGGcCGUcaCCUCCucgagGCAgGCGGGCCCGa -3'
miRNA:   3'- -CGUCuGUAc-GGAGG-----UGU-UGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 139084 0.67 0.864453
Target:  5'- --cGACGgucGCCUCCccggcgcggggguccGCGGCGcGGCCCGg -3'
miRNA:   3'- cguCUGUa--CGGAGG---------------UGUUGC-UCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 138772 0.66 0.915635
Target:  5'- -aGGACAUgGCCUCgC-CGGCG-GCCCc -3'
miRNA:   3'- cgUCUGUA-CGGAG-GuGUUGCuCGGGc -5'
29523 3' -55.5 NC_006151.1 + 138397 0.69 0.790242
Target:  5'- gGCGGAgGagGCCgagggccgcggggCCGCGGCGGGCgCCGg -3'
miRNA:   3'- -CGUCUgUa-CGGa------------GGUGUUGCUCG-GGC- -5'
29523 3' -55.5 NC_006151.1 + 135164 0.66 0.909671
Target:  5'- cGCGGGCGccGCgUcCCGCccCGAGCCCc -3'
miRNA:   3'- -CGUCUGUa-CGgA-GGUGuuGCUCGGGc -5'
29523 3' -55.5 NC_006151.1 + 126006 0.66 0.915635
Target:  5'- cGCAGcaccACGUGUUgCCGCGGCGuGUCCu -3'
miRNA:   3'- -CGUC----UGUACGGaGGUGUUGCuCGGGc -5'
29523 3' -55.5 NC_006151.1 + 125295 0.66 0.909671
Target:  5'- gGCGGGCAUGUCggaaUGCGgGCGGGCCgGu -3'
miRNA:   3'- -CGUCUGUACGGag--GUGU-UGCUCGGgC- -5'
29523 3' -55.5 NC_006151.1 + 122898 0.73 0.553494
Target:  5'- cGCAGGCugucGUGCCacgaUCCgACGACGGGCCgGc -3'
miRNA:   3'- -CGUCUG----UACGG----AGG-UGUUGCUCGGgC- -5'
29523 3' -55.5 NC_006151.1 + 122715 0.66 0.902834
Target:  5'- aGCAGccgGCGcGCCUCCACcgcggcgGACGcGCgCCGg -3'
miRNA:   3'- -CGUC---UGUaCGGAGGUG-------UUGCuCG-GGC- -5'
29523 3' -55.5 NC_006151.1 + 121915 0.69 0.802945
Target:  5'- -gGGGCcgggGCCUgggCCuCGGCGAGCCCGc -3'
miRNA:   3'- cgUCUGua--CGGA---GGuGUUGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 121171 0.67 0.876319
Target:  5'- cGCGGGCAcgGCgUCCACGuccgcgccgaGCGucGUCCGg -3'
miRNA:   3'- -CGUCUGUa-CGgAGGUGU----------UGCu-CGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.